Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/bioseq__set__handle_8cpp_source.html below:

NCBI C++ ToolKit: src/objmgr/bioseq_set_handle.cpp Source File

: m_Info(tse.x_GetScopeInfo().GetScopeLock(tse,

))

(

.HasParent_Info() ) {

(

.HasParent_Info() ) {

);

(

.HasParent_Info() ) {

processor.

(

TCommand(*

));

processor.

(

TCommand(*

,v));

processor.

(

TCommand(*

));

processor.

(

TCommand(*

, v));

processor.

(

TCommand(*

));

processor.

(

TCommand(*

, v));

processor.

(

TCommand(*

));

processor.

(

TCommand(*

, v));

processor.

(

TCommand(*

));

processor.

(

TCommand(*

, v));

processor.

(

TCommand(*

));

processor.

(

TCommand(*

,v));

processor.

(

TCommand(*

));

processor.

(

TCommand(*

,v));

);

processor.

(

TCommand(*

, d));

processor.

(

TCommand(*

, d));

processor.

(

TCommand(*

, v));

bool IsSetDescr(void) const

bool HasAnnots(void) const

CRef< CSeqdesc > RemoveSeqdesc(const CSeqdesc &d)

CRef< CSeqdesc > ReplaceSeqdesc(const CSeqdesc &old_desc, CSeqdesc &new_desc)

const TDescr & GetDescr(void) const

void AddSeq_descr(const TDescr &v)

bool AddSeqdesc(CSeqdesc &d)

bool CanGetDescr(void) const

CBioseq_set_EditHandle –.

const TDate & GetDate(void) const

bool IsSetClass(void) const

const TRelease & GetRelease(void) const

bool IsEmptySeq_set(void) const

bool CanGetClass(void) const

bool CanGetLevel(void) const

bool CanGetRelease(void) const

CConstRef< TObject > GetBioseq_setCore(void) const

bool IsSetDate(void) const

CConstRef< TObject > GetCompleteBioseq_set(void) const

void SetRelease(TRelease &v)

int GetEntryIndex(const CSeq_entry_Info &entry) const

bool CanGetColl(void) const

TClass GetClass(void) const

bool IsSetLevel(void) const

bool CanGetDate(void) const

const TColl & GetColl(void) const

bool CanGetId(void) const

bool IsSetColl(void) const

TLevel GetLevel(void) const

const TId & GetId(void) const

bool IsSetRelease(void) const

CMDReturn< CMD >::TReturn run(CMD *cmd)

Base class for all object manager exceptions.

@Seq_descr.hpp User-defined methods of the data storage class.

const CBioseq_set_Info & GetParentBioseq_set_Info(void) const

bool CanBeEdited(void) const

Return true if this TSE handle is local to scope and can be edited.

bool HasParent_Info(void) const

virtual const CBioObjectId & GetBioObjectId(void) const

IEditSaver * GetEditSaver(const Handle &handle)

static DLIST_TYPE *DLIST_NAME() last(DLIST_LIST_TYPE *list)

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

CBioseq_EditHandle GetEditHandle(const CBioseq_Handle &seq)

Get editable Biosec handle by regular one.

CBioseq_set_EditHandle GetEditHandle(void) const

Get 'edit' version of handle.

void x_RealSetDescr(TDescr &v) const

void ResetColl(void) const

CSeq_entry_Handle GetComplexityLevel(CBioseq_set::EClass cls) const

Go up to a certain complexity level (or the nearest level of the same priority if the required class ...

void x_RealResetClass(void) const

const TColl & GetColl(void) const

friend class CSeq_entry_Handle

bool CanGetDescr(void) const

const CTSE_Handle & GetTSE_Handle(void) const

void ResetDate(void) const

bool CanGetRelease(void) const

bool IsSetColl(void) const

TClass GetClass(void) const

bool CanGetDate(void) const

void x_Detach(void) const

CRef< CSeqdesc > x_RealReplaceSeqdesc(const CSeqdesc &old_desc, CSeqdesc &new_desc) const

CSeq_annot_EditHandle TakeAnnot(const CSeq_annot_EditHandle &annot) const

Remove the annotation from its location and attach to current one.

void x_RealSetLevel(TLevel v) const

CBioseq_set::TLevel TLevel

CRef< CSeqdesc > ReplaceSeqdesc(const CSeqdesc &old_desc, CSeqdesc &new_desc) const

void SetRelease(TRelease &v) const

CRef< CSeqdesc > x_RealRemoveSeqdesc(const CSeqdesc &d) const

bool CanGetClass(void) const

void x_RealSetColl(TColl &v) const

void SetClass(TClass v) const

CBioseq_EditHandle AttachBioseq(CBioseq &seq, int index=-1) const

Attach a bioseq.

bool IsSetDescr(void) const

void ResetDescr(void) const

void x_RealSetClass(TClass v) const

CScope & GetScope(void) const

Get scope this handle belongs to.

static const TComplexityTable & sx_GetComplexityTable(void)

bool IsEmptySeq_set(void) const

Check if the bioseq set is empty.

void x_RealAddSeq_descr(TDescr &v) const

bool AddSeqdesc(CSeqdesc &d) const

CSeq_entry_EditHandle TakeEntry(const CSeq_entry_EditHandle &entry, int index=-1) const

Remove seq-entry from its location and attach to current one.

bool IsSetDate(void) const

bool CanGetColl(void) const

void Remove(void) const

Remove this Seq-entry from parent, or scope if it's top level Seq-entry.

void SetId(TId &id) const

CSeq_annot_EditHandle AttachAnnot(CSeq_annot &annot) const

Attach an annotation.

void AddSeq_descr(TDescr &v) const

const TDate & GetDate(void) const

CConstRef< CBioseq_set > GetCompleteBioseq_set(void) const

Return the complete bioseq-set object.

CBioseq_set_Handle GetParentBioseq_set(void) const

Return a handle for the parent Bioseq-set, or null handle.

const CBioObjectId & GetBioObjectId(void) const

Get unique object id.

CSeq_annot_EditHandle TakeAnnot(const CSeq_annot_EditHandle &annot) const

Remove the annotation from its location and attach to current one.

void Remove(ERemoveMode mode=eRemoveSeq_entry) const

Remove current seqset-entry from its location.

const CSeq_entry_Info & x_GetInfo(void) const

void ResetClass(void) const

TSeq SelectSeq(CBioseq &seq) const

Make the empty Seq-entry be in seq state with specified Bioseq object.

static TComplexityTable sm_ComplexityTable

bool x_RealAddSeqdesc(CSeqdesc &d) const

void SetColl(TColl &v) const

void x_RealResetRelease(void) const

CBioseq_EditHandle CopyBioseq(const CBioseq_Handle &seq, int index=-1) const

Attach a copy of the bioseq.

CBioseq_set::TRelease TRelease

CSeq_entry_Handle GetParentEntry(void) const

Return a handle for the parent seq-entry of the bioseq.

CSeq_entry_Handle GetExactComplexityLevel(CBioseq_set::EClass cls) const

Return level with exact complexity, or empty handle if not found.

CBioseq_set_EditHandle(void)

bool CanGetLevel(void) const

void SetLevel(TLevel v) const

CSeq_entry_EditHandle AttachEntry(CSeq_entry &entry, int index=-1) const

Attach an existing seq-entry.

TSeq CopySeq(const CBioseq_Handle &seq) const

Make the empty Seq-entry be in seq state with specified Bioseq object.

void x_RealResetLevel(void) const

const CBioseq_set_Info & x_GetInfo(void) const

bool IsSetClass(void) const

CBioseq_set_Info & x_GetInfo(void) const

CScope_Impl & x_GetScopeImpl(void) const

const TDescr & GetDescr(void) const

CRef< CSeqdesc > RemoveSeqdesc(const CSeqdesc &d) const

bool IsSetRelease(void) const

CSeq_entry_EditHandle CopyEntry(const CSeq_entry_Handle &entry, int index=-1) const

Attach a copy of the existing seq-entry.

void x_RealResetDescr(void) const

void ResetRelease(void) const

CBioseq_EditHandle TakeBioseq(const CBioseq_EditHandle &seq, int index=-1) const

Remove bioseq from its location and attach to current one.

CSeq_annot_EditHandle AttachAnnot(CSeq_annot &annot) const

Attach an annotation.

CSeq_entry_EditHandle GetParentEntry(void) const

Navigate object tree.

CSeq_entry_EditHandle AddNewEntry(int index) const

Create new empty seq-entry.

TLevel GetLevel(void) const

void ResetLevel(void) const

void SetDate(TDate &v) const

void x_RealSetId(TId &id) const

const TRelease & GetRelease(void) const

friend class CSeq_entry_EditHandle

CSeq_annot_EditHandle CopyAnnot(const CSeq_annot_Handle &annot) const

Attach a copy of the annotation.

CSeq_entry_Handle GetTopLevelEntry(void) const

Return a handle for the top-level seq-entry.

void Reset(void)

Reset handle and make it not to point to any seq-entry.

CSeq_annot_EditHandle CopyAnnot(const CSeq_annot_Handle &annot) const

Attach a copy of the annotation.

CSeq_entry_Handle GetParentEntry(void) const

Get parent Seq-entry handle.

bool CanGetId(void) const

TSeq TakeSeq(const TSeq &seq) const

Make the empty Seq-entry be in seq state with moving bioseq object from the argument seq.

bool IsSetLevel(void) const

void x_RealSetRelease(TRelease &v) const

CConstRef< CBioseq_set > GetBioseq_setCore(void) const

Return core data for the bioseq-set.

TDescr & SetDescr(void) const

int GetSeq_entry_Index(const CSeq_entry_Handle &handle) const

const TObjectInfo & GetObjectInfo(void) const

void x_RealResetDate(void) const

void x_RealResetId(void) const

bool HasAnnots(void) const

void x_RealResetColl(void) const

void x_RealSetDate(TDate &v) const

const TId & GetId(void) const

CRef< C > Ref(C *object)

Helper functions to get CRef<> and CConstRef<> objects.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4