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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/bioseq__edit__commands_8hpp_source.html below:

NCBI C++ ToolKit: include/objmgr/impl/bioseq_edit_commands.hpp Source File

1 #ifndef OBJECTS_OBJMGR_IMPL___BIOSEQ_EDIT_COMMNADS__HPP 2 #define OBJECTS_OBJMGR_IMPL___BIOSEQ_EDIT_COMMNADS__HPP 82 template

<

bool

add = true>

187 #define DEFINE_DB_FUNC(type) \ 189 struct DBFunc<CBioseq_EditHandle,CSeq_inst::T##type> { \ 190  typedef CBioseq_EditHandle Handle; \ 191  typedef CSeq_inst::T##type T; \ 192  typedef MemetoTrait<T,IsCRef<T>::value> TTrait; \ 193  typedef TTrait::TRef TRef; \ 194  typedef TTrait::TConstRef TConstRef; \ 196  static inline void Set(IEditSaver& saver, \ 197  const Handle& handle, TConstRef data, \ 198  IEditSaver::ECallMode mode) \ 199  { saver.SetSeqInst##type(handle, data, mode); } \ 200  static inline void Reset(IEditSaver& saver, \ 201  const Handle& handle, \ 202  IEditSaver::ECallMode mode) \ 203  { saver.ResetSeqInst##type(handle, mode); } \ 249 #define DEFINE_SEQINST_SCALAR_CMD(type) \ 251 struct MemetoFunctions<CBioseq_EditHandle,CSeq_inst::T##type> { \ 252  typedef CBioseq_EditHandle TEditHandle; \ 253  typedef CSeq_inst::T##type T; \ 254  typedef MemetoTrait<T,IsCRef<T>::value> TTrait; \ 255  typedef TTrait::TValue TValue; \ 256  typedef TTrait::TStorage TStorage; \ 258  static inline bool IsSet(const TEditHandle& handle) \ 259  { return handle.IsSetInst_##type(); } \ 260  static inline TStorage Get(const TEditHandle& handle) \ 261  { return handle.GetInst_##type(); } \ 262  static inline void Set(const TEditHandle& handle, TStorage data) \ 263  { handle.x_RealSetInst_##type(data); } \ 264  static inline void Reset(const TEditHandle& handle) \ 265  { handle.x_RealResetInst_##type(); } \ 268 DEFINE_DB_FUNC(type) \ 270 typedef CSetValue_EditCommand<CBioseq_EditHandle, CSeq_inst::T##type> \ 271  CSet_SeqInst##type##_EditCommand; \ 272 typedef CResetValue_EditCommand<CBioseq_EditHandle, CSeq_inst::T##type> \ 273  CReset_SeqInst##type##_EditCommand; 281 #undef DEFINE_SEQINST_SCALAR_CMD 283 #define DEFINE_SEQINST_REF_CMD(type) \ 284 DEFINE_CREF_TYPE(CSeq_inst::T##type); \ 287 struct MemetoFunctions<CBioseq_EditHandle,CSeq_inst::T##type> { \ 288  typedef CBioseq_EditHandle TEditHandle; \ 289  typedef CSeq_inst::T##type T; \ 290  typedef MemetoTrait<T,IsCRef<T>::value> TTrait; \ 291  typedef TTrait::TValue TValue; \ 292  typedef TTrait::TStorage TStorage; \ 294  static inline bool IsSet(const TEditHandle& handle) \ 295  { return handle.IsSetInst_##type(); } \ 296  static inline TStorage Get(const TEditHandle& handle) \ 297  { return TStorage(const_cast<TValue*>(&handle.GetInst_##type())); } \ 298  static inline void Set(const TEditHandle& handle, TStorage& data) \ 299  { handle.x_RealSetInst_##type(*data); } \ 300  static inline void Reset(const TEditHandle& handle) \ 301  { handle.x_RealResetInst_##type(); } \ 304 DEFINE_DB_FUNC(type) \ 306 typedef CSetValue_EditCommand<CBioseq_EditHandle, CSeq_inst::T##type> \ 307  CSet_SeqInst##type##_EditCommand; \ 308 typedef CResetValue_EditCommand<CBioseq_EditHandle, CSeq_inst::T##type> \ 309  CReset_SeqInst##type##_EditCommand; 316 #undef DEFINE_SEQINST_REF_CMD 317 #undef DEFINE_DB_FUNC

User-defined methods of the data storage class.

User-defined methods of the data storage class.

DEFINE_CREF_TYPE(CSeq_inst)

#define DEFINE_SEQINST_REF_CMD(type)

CSetValue_EditCommand< CBioseq_EditHandle, CSeq_inst > CSet_SeqInst_EditCommand

CRemove_EditCommand< CBioseq_EditHandle > CRemoveBioseq_EditCommand

#define DEFINE_SEQINST_SCALAR_CMD(type)

CId_EditCommand< true > CAddId_EditCommand

CResetValue_EditCommand< CBioseq_EditHandle, CSeq_inst > CReset_SeqInst_EditCommand

CId_EditCommand< false > CRemoveId_EditCommand

CId_EditCommand(const CBioseq_EditHandle &handle, const CSeq_id_Handle &id)

CBioseq_EditHandle m_Handle

AddRemoveIdEditAction< add > TAction

const CSeq_id_Handle & m_Id

virtual void Do(IScopeTransaction_Impl &tr)

virtual ~CId_EditCommand()

set< CSeq_id_Handle > TIds

const CBioseq_EditHandle & m_Handle

void SelectNone(const CSeq_entry_EditHandle &entry)

CBioseq_EditHandle SelectSeq(const CSeq_entry_EditHandle &entry, CBioseq &seq)

Interface (functor) for object editing.

virtual void SetSeqInst(const CBioseq_Handle &, const CSeq_inst &, ECallMode)=0

CSeq_inst operatoions.

ECallMode

This flag can be used for optimization purpose.

@ eUndo

The method is called when a modification has just been undone.

@ eDo

The method is called when a modification has just been done.

virtual void AddId(const CBioseq_Handle &, const CSeq_id_Handle &, ECallMode)=0

ID operation.

virtual void ResetSeqInst(const CBioseq_Handle &, ECallMode)=0

virtual void Attach(const CBioObjectId &old_id, const CSeq_entry_Handle &entry, const CBioseq_Handle &what, ECallMode)=0

virtual void RemoveId(const CBioseq_Handle &, const CSeq_id_Handle &, ECallMode)=0

virtual void Detach(const CSeq_entry_Handle &entry, const CBioseq_Handle &what, ECallMode)=0

virtual void AddCommand(TCommand)=0

virtual void AddEditSaver(IEditSaver *)=0

Include a standard set of the NCBI C++ Toolkit most basic headers.

IEditSaver * GetEditSaver(const Handle &handle)

void x_RealResetInst() const

bool x_RealAddId(const CSeq_id_Handle &id) const

void x_RealSetInst(TInst &v) const

bool IsSetInst(void) const

bool x_RealRemoveId(const CSeq_id_Handle &id) const

const TInst & GetInst(void) const

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

#define NCBI_XOBJMGR_EXPORT

Portable reference counted smart and weak pointers using CWeakRef, CRef, CObject and CObjectEx.

static void DoInDB(IEditSaver &saver, const CBioseq_EditHandle &handle, const CSeq_id_Handle &id)

static void UndoInDB(IEditSaver &saver, const CBioseq_EditHandle &handle, const CSeq_id_Handle &id)

static bool Do(const CBioseq_EditHandle &handle, const CSeq_id_Handle &id)

static void Undo(const CBioseq_EditHandle &handle, const CSeq_id_Handle &id)

static bool Do(const CBioseq_EditHandle &handle, const CSeq_id_Handle &id)

static void Undo(const CBioseq_EditHandle &handle, const CSeq_id_Handle &id)

static void DoInDB(IEditSaver &saver, const CBioseq_EditHandle &handle, const CSeq_id_Handle &id)

static void UndoInDB(IEditSaver &saver, const CBioseq_EditHandle &handle, const CSeq_id_Handle &id)

CId_EditCommand< add > CMD

static TReturn GetRet(CMD *cmd)

MemetoTrait< T, IsCRef< T >::value > TTrait

CBioseq_EditHandle Handle

static void Reset(IEditSaver &saver, const Handle &handle, IEditSaver::ECallMode mode)

TTrait::TConstRef TConstRef

static void Set(IEditSaver &saver, const Handle &handle, TConstRef data, IEditSaver::ECallMode mode)

TTrait::TStorage TStorage

CBioseq_EditHandle TEditHandle

static void Set(const TEditHandle &handle, TStorage &data)

static TStorage Get(const TEditHandle &handle)

MemetoTrait< T, IsCRef< T >::value > TTrait

static void Reset(const TEditHandle &handle)

static bool IsSet(const TEditHandle &handle)

TTrait::TStorage TStorage

static TRef Restore(TStorage t)

CBioseq_EditHandle Handle

static void Do(CScope_Impl &scope, const CSeq_entry_EditHandle &entry, const Handle &)

static void DoInDB(IEditSaver &saver, const CSeq_entry_EditHandle &entry, const Handle &handle)

static void UndoInDB(IEditSaver &saver, const CBioObjectId &old_id, const CSeq_entry_EditHandle &entry, const Handle &handle)

static void Undo(CScope_Impl &scope, const CSeq_entry_EditHandle &entry, const Handle &handle)

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