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NCBI C++ ToolKit: src/objmgr/bioseq_ci.cpp Source File

( !entry || entry.

() ) {

(

.back().GetParentBioseq_set().GetClass() ==

}

(

[--pos].GetParentBioseq_set().GetClass() != set_class );

);

(

!= &bioseq_ci ) {

static CRef< CScope > m_Scope

bool sx_IsProt(CSeq_inst::EMol mol)

bool sx_IsNa(CSeq_inst::EMol mol)

TInst_Mol GetInst_Mol(void) const

TClass GetClass(void) const

Base class for all object manager exceptions.

const TSeq & GetSeq(void) const

const TSet & GetSet(void) const

static DLIST_TYPE *DLIST_NAME() next(DLIST_LIST_TYPE *list, DLIST_TYPE *item)

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

CSeq_entry_Handle GetSeq_entryHandle(CDataLoader *loader, const TBlobId &blob_id, EMissing action=eMissing_Default)

Get Seq-entry handle by its blob-id, with possible loading.

const CSeq_entry_Info & x_GetInfo(void) const

CSeq_entry_Handle GetParentEntry(void) const

Return a handle for the parent seq-entry of the bioseq.

void Reset(void)

Reset handle and make it not to point to any bioseq.

void Reset(void)

Reset handle and make it not to point to any seq-entry.

CBioseq_Handle m_CurrentBioseq

CSeq_entry_Handle m_CurrentEntry

void x_PushEntry(const CSeq_entry_Handle &entry)

EBioseqLevelFlag

Class of bioseqs to iterate.

bool x_SkipClass(CBioseq_set::TClass set_class)

void x_PopEntry(bool next=true)

void x_Initialize(const CSeq_entry_Handle &entry)

CBioseq_CI & operator=(const CBioseq_CI &bioseq_ci)

bool x_IsValidMolType(const CBioseq_Info &seq) const

CBioseq_CI & operator++(void)

Move to the next object in iterated sequence.

@ eLevel_Parts

Parts only.

@ eLevel_Mains

Main bioseq only.

@ eLevel_IgnoreClass

Search for bioseqs in any bioseq-set regardless of types and classes.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

@ eClass_parts

parts for 2 or 3

@ eClass_conset

constructed sequence + parts

@ eClass_nuc_prot

nuc acid and coded proteins

@ eClass_segset

segmented sequence + parts

EMol

molecule class in living organism

@ eMol_not_set

> cdna = rna

@ eMol_na

just a nucleic acid

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