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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/bins__glyph_8hpp_source.html below:

NCBI C++ ToolKit: include/gui/packages/pkg_snp/bins/bins_glyph.hpp Source File

1 #ifndef GUI_PACKAGES_SNP_BINS_TRACK__BINS_GLYPH__HPP 2 #define GUI_PACKAGES_SNP_BINS_TRACK__BINS_GLYPH__HPP 63  if

(rhs.

obj

.

Empty

())

return false

;

64  if

(this->obj.

Empty

())

return true

;

66  return

(this->obj->range.GetFrom() < rhs.

obj

->range.GetFrom());

95  static string

GenerateBinSignature(

const string

& title,

96  const string

& annot_name,

99

objects::NSnpBins::TBinType BinType);

106  const

objects::CSeq_loc& loc,

107

objects::CScope * scope);

129

objects::NSnpBins::TBinType

GetType

()

const

{

return

m_Type; }

130  void SetType

(objects::NSnpBins::TBinType

t

) { m_Type =

t

; }

134  void SetTitle

(

const string

& title);

137  void

SetAnnotName(

const string

& name);

138  const string

& GetAnnotName()

const

;

147  virtual void x_Draw

()

const

;

158  void

x_BuildNonEmptyBinList()

const

;

159  TSeqRange

x_GetBinRange(

unsigned int

bin)

const

;

160  string

x_GetColorTheme()

const

;

207  if

(val1.

obj

.

Empty

())

return

val2;

208  if

(val2.

obj

.

Empty

())

return

val1;

211  result

.obj.Reset(

new

objects::NSnpBins::SBin);

213  ITERATE

(objects::NSnpBins::TBinEntryList, iter, val1.

obj

->m_EntryList) {

214  result

.obj->m_EntryList.push_back(*iter);

217  ITERATE

(objects::NSnpBins::TBinEntryList, iter, val2.

obj

->m_EntryList) {

218  result

.obj->m_EntryList.push_back(*iter);

221  result

.obj->count = val1.

obj

->count + val2.

obj

->count;

223  NCBI_ASSERT

(val1.

obj

->type == val2.

obj

->type,

"Merged CBinsGlyph::SBinMapped should always have the same types!"

);

226  result

.obj->m_SigEntry = (objects::NSnpBins::ChooseSignificant(val1.

obj

->m_SigEntry, val2.

obj

->m_SigEntry,

result

.obj->type) == 1)

227

? val1.

obj

->m_SigEntry

228

: val2.

obj

->m_SigEntry;

230  result

.obj->range = val1.

obj

->range.CombinationWith(val2.

obj

->range);

CBinsGlyph::SBinMapped operator+(const CBinsGlyph::SBinMapped &val1, const CBinsGlyph::SBinMapped &val2)

CDensityMap< SBinMapped > TDensityMap

CConstRef< objects::CSeq_loc > m_Location

TMappedBinList m_NonEmptyBins

void SetType(objects::NSnpBins::TBinType t)

objects::NSnpBins::TBinType GetType() const

const string & GetTitle() const

void SetTitle(const string &title)

const TDensityMap & GetDensityMap(void) const

Access the first density map.

CRef< objects::CScope > m_Scope

const string & GetAnnotName() const

list< SBinMapped * > TMappedBinList

TSeqRange GetBinRangeAt(TSeqPos pos) const

objects::NSnpBins::TBinType m_Type

void SetAnnotName(const string &name)

class CSeqGlyph defines an interface that wraps a rectilinear abstract object.

virtual bool IsClickable() const

Query if this glyph is clickable.

virtual void x_Draw() const =0

The default renderer for this layout object.

virtual void GetTooltip(const TModelPoint &, ITooltipFormatter &tt, string &t_title) const

Get the tooltip if available.

virtual bool NeedTooltip(const TModelPoint &, ITooltipFormatter &, string &) const

Check if need to show tooltip.

virtual bool OnLeftDblClick(const TModelPoint &)

virtual TSeqRange GetRange(void) const

get the total range of this object.

virtual void GetHTMLActiveAreas(TAreaVector *) const

Get html active areas.

virtual void x_UpdateBoundingBox()=0

Update the bounding box assuming children's sizes are fixed if any.

vector< CHTMLActiveArea > TAreaVector

bool operator<(const CEquivRange &A, const CEquivRange &B)

unsigned int TSeqPos

Type for sequence locations and lengths.

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define NCBI_ASSERT(expr, mess)

NCBI_XOBJUTIL_EXPORT string GetTitle(const CBioseq_Handle &hnd, TGetTitleFlags flags=0)

bool Empty(void) const THROWS_NONE

Check if CRef is empty – not pointing to any object, which means having a null value.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_GUIWIDGETS_SNP_EXPORT

Portable reference counted smart and weak pointers using CWeakRef, CRef, CObject and CObjectEx.

CRef< objects::NSnpBins::SBin > obj

virtual binary_functor< SBinMapped > * clone() const

TEMPLATE binary functor base struct.

static void SetTitle(CRef< CSeq_entry > entry, string title)

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