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NCBI C++ ToolKit: src/objtools/import/ftable/bed_import_data.cpp Source File

blockCount,

std::vector<int>& blockStarts,

std::vector<int>& blockSizes)

(chromStart == thickStart && thickStart == thickEnd) {

(blockCount == 0) {

(

=0;

< blockCount; ++

) {

pBlockInterval->

(chromStart + blockStarts[

]);

pBlockInterval->

(chromStart + blockStarts[

] + blockSizes[

]);

chrom =

;

chromStart =

;

chromEnd =

;

chromStrand =

;

thickStart =

;

thickEnd =

;

vector<string> blockStrs;

blockStr =

;

blockStrs.push_back(blockStr);

<<

;

<<

<< chrom <<

;

<<

<< chromStart <<

;

<<

<< chromEnd <<

;

<<

<<

<<

;

<<

<< chromStrand <<

;

<<

<< thickStart <<

;

<<

<< thickEnd <<

;

intScore =

(score);

(intScore == score) {

=

+

+

+

+

;

void xInitializeRgb(const RgbValue &)

CBedImportData(const CIdResolver &, CImportMessageHandler &)

void Initialize(const std::string &, TSeqPos, TSeqPos, const std::string &, double, ENa_strand, TSeqPos, TSeqPos, const RgbValue &, unsigned int, const std::vector< int > &, const std::vector< int > &)

CUser_object mDisplayData

virtual void Serialize(CNcbiOstream &) override

void xInitializeScore(double)

const CIdResolver & mIdResolver

CUser_object & AddField(const string &label, const string &value, EParseField parse=eParse_String)

add a data field to the user object that holds a given value

std::ofstream out("events_result.xml")

main entry point for tests

unsigned int TSeqPos

Type for sequence locations and lengths.

virtual void Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)

Set object to copy of another one.

string GetSeqIdString(bool with_version=false) const

Return seqid string with optional version for text seqid type.

void SetPacked_int(TPacked_int &v)

virtual void Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)

Override Assign() to incorporate cache invalidation.

void SetNull(void)

Override all setters to incorporate cache invalidation.

IO_PREFIX::ostream CNcbiOstream

Portable alias for ostream.

static string IntToString(int value, TNumToStringFlags flags=0, int base=10)

Convert int to string.

static string Join(const TContainer &arr, const CTempString &delim)

Join strings using the specified delimiter.

virtual void Reset(void)

Reset the whole object.

void SetType(TType &value)

Assign a value to Type data member.

void SetTo(TTo value)

Assign a value to To data member.

ENa_strand

strand of nucleic acid

const Tdata & Get(void) const

Get the member data.

const TId & GetId(void) const

Get the Id member data.

void SetId(TId &value)

Assign a value to Id data member.

TFrom GetFrom(void) const

Get the From member data.

void SetFrom(TFrom value)

Assign a value to From data member.

virtual void Reset(void)

Reset the whole object.

TStrand GetStrand(void) const

Get the Strand member data.

TTo GetTo(void) const

Get the To member data.

bool IsInt(void) const

Check if variant Int is selected.

const TInt & GetInt(void) const

Get the variant data.

bool IsNull(void) const

Check if variant Null is selected.

void SetStrand(TStrand value)

Assign a value to Strand data member.

const TPacked_int & GetPacked_int(void) const

Get the variant data.

Defines classes: CDirEntry, CFile, CDir, CSymLink, CMemoryFile, CFileUtil, CFileLock,...

double r(size_t dimension_, const Int4 *score_, const double *prob_, double theta_)

static DP_BlockInfo * blocks

int g(Seg_Gsm *spe, Seq_Mtf *psm, Thd_Gsm *tdg)

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