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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/bed__coverage__graph_8hpp_source.html below:

NCBI C++ ToolKit: include/gui/widgets/seq_graphic/bed_coverage_graph.hpp Source File

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1 #ifndef GUI_WIDGETS_SEQ_GRAPHIC___BED_COVERAGE_GRAPH__HPP 2 #define GUI_WIDGETS_SEQ_GRAPHIC___BED_COVERAGE_GRAPH__HPP 58  return "BedGraphCache"

;

61  static const int

kMinBinSize = 2500;

63  static string

GetCacheKey(objects::CScope& scope,

64  const

objects::CSeq_id& seq_id,

65  const string

& bed_id,

66  const string

& remote_path,

78  size_t

GetEstimatedFeatureCount(

const TSeqRange

& range,

int

& max_count);

84  void

x_InitData(

ICache

& icache);

85  void

x_SaveData(

ICache

& icache);

96  int

m_DataBinCount = 100000;

Serialization / compression of bvector<>. Set theoretical operations on compressed BLOBs.

Sparse constainer sparse_vector<> for integer types using bit-transposition transform.

virtual ~CBedCoverageGraph()

mutex m_DataMutex

data access mutex

TSparseVector m_Data

map of sprasvectors, the key is used as a part of suffix of NetCache key (m_DataKey + "_" + this map ...

void x_CreateDataKey(string &cache_key)

static string GetStorageName()

string m_RemotePath

path to remote data or srz accession

string m_LastModified

timestamp of the remote data last modified date as reported by www server

BLOB cache read/write/maintenance interface.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

Compressed bitset (entry point to bm.h)

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