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USING_SCOPE (objects) static bool s_ReadData (ICache &icache, const string &data_key, int &bin_count, bm::sparse_vector< unsigned, bm::bvector<> > &sv, bm::word_t *tb) void s_GetBigBedSummary (const string &data_url, const string &chrom, const string &from, const string &to, int bin_count, vector< unsigned int > &data_points) void s_GetBigBedFeats (const string &data_url, const string &chrom, const string &from, const string &to, vector< TSeqRange > &ranges) ◆ s_GetBigBedFeats()Definition at line 233 of file bed_coverage_graph.cpp.
References CRmtFileStatus::Check(), CDirEntry::CreateTmpFile(), CProcess::eHandle, CExec::eNoWait, CRmtFileStatus::ESuggestedAction_Access, CRmtFileStatus::ESuggestedAction_Skip, CDirEntry::eTmpFileCreate, eUnknown, NStr::fAllowLeadingSpaces, NStr::fAllowTrailingSpaces, NStr::fConvErr_NoThrow, CRmtScriptTimeout::Get(), CProcess::CExitInfo::GetExitCode(), CExec::CResult::GetProcessHandle(), CDirEntry::GetTmpName(), NCBI_THROW, NcbiGetline(), NULL, NStr::NumericToString(), CRmtFileStatus::Set(), CExec::SpawnL(), NStr::SplitInTwo(), NStr::StringToInt(), val, and CProcess::Wait().
◆ s_GetBigBedSummary()Definition at line 190 of file bed_coverage_graph.cpp.
References CRmtFileStatus::Check(), CDirEntry::CreateTmpFile(), CProcess::eHandle, CExec::eNoWait, CRmtFileStatus::ESuggestedAction_Access, CRmtFileStatus::ESuggestedAction_Skip, CDirEntry::eTmpFileCreate, eUnknown, NStr::fAllowLeadingSpaces, NStr::fAllowTrailingSpaces, NStr::fConvErr_NoThrow, CRmtScriptTimeout::Get(), CProcess::CExitInfo::GetExitCode(), CExec::CResult::GetProcessHandle(), CDirEntry::GetTmpName(), NCBI_THROW, NcbiGetline(), NULL, NStr::NumericToString(), round(), CRmtFileStatus::Set(), CExec::SpawnL(), NStr::StringToDouble(), val, and CProcess::Wait().
Referenced by CBedCoverageGraph::x_InitData().
◆ s_ReadData()Definition at line 132 of file bed_coverage_graph.cpp.
References buffer, ERR_POST, Error(), eUnknown, CRWStreambuf::fOwnReader, ICache::GetReadStream(), ICache::GetSize(), int, NCBI_THROW, NcbiEmptyString, ncbi::grid::netcache::search::fields::size, and bm::sparse_vector_deserialize().
Referenced by CBedCoverageGraph::Init().
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