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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/bed__annot__assembler_8cpp_source.html below:

NCBI C++ ToolKit: src/objtools/import/ftable/bed_annot_assembler.cpp Source File

(!geneLocation.IsNull()) {

pGene->SetData().SetRegion(record.

());

pGene->SetLocation().Assign(geneLocation);

(displayData.IsSetData()) {

pDisplayData->

(displayData);

pGene->SetExts().push_back(pDisplayData);

annot.

().SetFtable().push_back(pGene);

mRnaLocation =

(!mRnaLocation->IsNull()) {

pMrna->SetData().SetRegion(record.

());

pMrna->SetLocation(). Assign(*mRnaLocation);

annot.

().SetFtable().push_back(pMrna);

(!mRnaLocation->IsNull()) {

*mRnaLocation, 0,

);

pCdsLocation->

(*pIntersection);

(!pCdsLocation->

()) {

annot.

().SetFtable().push_back(pCds);

(pGene && pMrna) {

pGene->AddSeqFeatXref(pMrna->GetId());

pMrna->AddSeqFeatXref(pGene->GetId());

pGene->AddSeqFeatXref(pCds->

());

pMrna->AddSeqFeatXref(pCds->

());

description = annotInfo.

(

);

(!description.empty()) {

name = annotInfo.

(

);

pTrackData->

().SetStr(

);

(

: annotInfo) {

annot.

().Set().push_back(user);

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

std::string ValueOf(const std::string &) const

unique_ptr< CFeatureIdGenerator > mpIdGenerator

virtual void FinalizeAnnot(const CAnnotImportData &, CSeq_annot &) override

virtual ~CBedAnnotAssembler()

void ProcessRecord(const CFeatImportData &, CSeq_annot &) override

CBedAnnotAssembler(CImportMessageHandler &)

const CSeq_loc & ChromLocation() const

const CSeq_loc & BlocksLocation() const

const std::string & Name() const

const CSeq_loc & ThickLocation() const

const CUser_object & DisplayData() const

void SetNameDesc(const string &name)

void SetTitleDesc(const string &title)

namespace ncbi::objects::

bool AddSeqFeatXref(const CSeqFeatXref::TId &id)

CUser_object & AddField(const string &label, const string &value, EParseField parse=eParse_String)

add a data field to the user object that holds a given value

virtual void Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)

Set object to copy of another one.

virtual void Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)

Override Assign() to incorporate cache invalidation.

CRef< CSeq_loc > Merge(TOpFlags flags, ISynonymMapper *syn_mapper) const

All functions create and return a new seq-loc object.

CRef< CSeq_loc > Intersect(const CSeq_loc &other, TOpFlags flags, ISynonymMapper *syn_mapper) const

Find the intersection with the seq-loc, merge/sort resulting ranges depending on flags.

void Reset(void)

Reset reference object.

TData & SetData(void)

Assign a value to Data data member.

void SetType(TType &value)

Assign a value to Type data member.

void SetLocation(TLocation &value)

Assign a value to Location data member.

const TId & GetId(void) const

Get the Id member data.

void SetId(TId &value)

Assign a value to Id data member.

void SetData(TData &value)

Assign a value to Data data member.

virtual void Reset(void)

Reset the whole object.

bool IsNull(void) const

Check if variant Null is selected.

void SetData(TData &value)

Assign a value to Data data member.

void SetDesc(TDesc &value)

Assign a value to Desc data member.

TUser & SetUser(void)

Select the variant.

Defines classes: CDirEntry, CFile, CDir, CSymLink, CMemoryFile, CFileUtil, CFileLock,...

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