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NCBI C++ ToolKit: include/db/bdb/bdb_range_map.hpp Source File

add_to_free_list);

(

,

ignore_free_list=

);

ignore_free_list=

);

<

TBV>

<

TBV>

(Db_Bdb_RangeMap, 1,

<< ex.

());

(exception& ex)

(Db_Bdb_RangeMap, 2,

<< ex.

());

<

TBV>

m_FreeList->clear(

);

<

TBV>

UpdateInsert(

);

<

TBV>

add_to_free_list)

(from == 0 && to == 0) {

(eInvalidValue,

);

(eInvalidValue,

);

from_db = this->FromId;

to_db = this->ToId;

(from >= from_db && from <= to_db) {

);

from_db = this->FromId;

to_db = this->ToId;

(to >= from_db && to <= to_db) {

);

(add_to_free_list) {

m_FreeList->set_range(from, to,

);

<

TBV>

(!ignore_free_list) {

(m_FreeList->test(

)) {

from_id = this->FromId;

to_id = this->ToId;

(from_id <=

&&

<= to_id) {

dst + (

- from_id);

<

TBV>

ignore_free_list)

from_id, to_id, dst;

from_id = to_id = dst = 0;

TBV::enumerator en(bv_src.first());

( ;en.valid(); ++en) {

(!ignore_free_list) {

(m_FreeList->test(

)) {

(from_id <=

&&

<= to_id) {

bv_dst->set(dst + (

- from_id));

bv_remapped->set(

);

cur.

(&ptr,

(dst), eReallocForbidden);

from_id = this->FromId;

(from_id <=

&&

<= to_id) {

bv_dst->set(dst + (

- from_id));

bv_remapped->set(

);

BDB library BLOB support.

Berkeley BDB file cursor.

Berkeley DB BLOB File class.

Berkeley DB file cursor class.

Range map class, stores unsigned integer range mappings like 10 to 15 maps into 100 to 115.

TBitVector & GetFreeList()

EBDB_ErrCode AddRange(unsigned from, unsigned to, unsigned dest, bool add_to_free_list)

Add remapping range.

unsigned Remap(unsigned id, bool ignore_free_list=false)

Remap one single id.

CBDB_FieldUint4 FromId

From id.

const TBitVector & GetFreeList() const

Get list of free ids.

void LoadFreeList()

Load free list (Storage should be open first)

CBDB_FieldUint4 ToId

To id.

EBDB_ErrCode Save()

Save free list.

Reallocable memory buffer (no memory copy overhead) Mimics vector<>, without the overhead of explicit...

Include a standard set of the NCBI C++ Toolkit most basic headers.

EBDB_ErrCode ReadRealloc(TBuffer &buffer)

Read BLOB into vector.

void SetCondition(ECondition cond_from, ECondition cond_to=eNotSet)

Set search condition(type of interval)

EBDB_ErrCode FetchFirst()

void BindKey(const char *field_name, CBDB_Field *key_field, size_t buf_size=0)

EBDB_ErrCode

BDB Return codes.

CBDB_ConditionHandle From

#define BDB_THROW(errcode, message)

#define ERR_POST_XX(error_name, err_subcode, message)

Error posting with error code having given name and with given error subcode.

const string & GetMsg(void) const

Get message string.

virtual const char * what(void) const noexcept

Standard report (includes full backlog).

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

@ BM_GAP

GAP compression is ON.

size_t deserialize(BV &bv, const unsigned char *buf, bm::word_t *temp_block=0, const bm::bv_ref_vector< BV > *ref_vect=0)

Bitvector deserialization from a memory BLOB.

Definition of all error codes used in bdb library (bdb.lib and ncbi_xcache_bdb.lib).

Compressed bitset (entry point to bm.h)

Bitset relates utilities.

void BV_Serialize(const TBV &bv, TBuffer &buf, bm::word_t *tmp_block=0, bool optimize_bv=false)

Serialize bitset into a vector<char> compatible buffer.

Defines NCBI C++ exception handling.

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