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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/autodef_8cpp_source.html below:

NCBI C++ ToolKit: src/objmgr/util/autodef.cpp Source File

: m_Cancelled(

)

(!

.IsSetAnnot()) {

num_features = 0;

((*a)->IsFtable()) {

num_features += (*a)->GetData().GetFtable().size();

(num_features > 100) {

(num_features < 100) {

( ; seq_iter; ++seq_iter ) {

(

& it : sources) {

k, j,

;

(index_list.size() < 2) {

(k = 0; k < index_list.size() - 1; k++) {

(j = k + 1; j < index_list.size(); j++) {

(modifier_list[index_list[k]].GetRank() > modifier_list[index_list[j]].GetRank()) {

index_list[k] = index_list[j];

index_list[j] =

;

remaining_list.clear();

(k = 0; k < modifier_list.size(); k++) {

(modifier_list[k].AllPresent() && modifier_list[k].AllUnique()) {

index_list.push_back(k);

}

(modifier_list[k].AnyPresent()) {

remaining_list.push_back(k);

(k = 0; k < remaining_list.size(); k++) {

index_list.push_back(remaining_list[k]);

modifier_list.clear();

num_present = 0;

(

k = 0; k < modifier_list.size(); k++) {

(modifier_list[k].AnyPresent()) {

TModifierComboVector::iterator it;

(combo_list[0]->GetMaxInGroup() == 1) {

it = combo_list.begin();

(it != combo_list.end()) {

= (*it)->ExpandByAnyPresent ();

(!

.empty()) {

(k = 0; k <

.size(); k++) {

it = combo_list.erase (it);

(k = 0; k < add_list.size(); k++) {

(combo_list[0]->GetMaxInGroup() == 1) {

combo_list[0];

modifier_list.clear();

(

k = 0; k < modifier_list.size(); k++) {

(modifier_list[k].AnyPresent()) {

(modifier_list[k].IsOrgMod()) {

best->GetSourceDescriptionString(bsrc);

(main_clause ==

) {

(seh && seh.

()) {

(seh && seh.

()) {

( ; seq_iter; ++seq_iter ) {

(*seq_iter == bh) {

is_list =

;

is_single =

;

found_single =

;

(feat_ci && is_list) {

}

(

(feat_ci->

(),

)) {

found_single =

;

(is_single && !found_single) {

is_single =

;

has_promoter =

;

(f_ci && !has_promoter) {

& uo = d->

();

uo.HasField(

,

) ?

fake_promoter_loc->

().SetId(*new_id);

fake_promoter_loc->

().SetFrom(0);

;

(

it : fclause) {

(it->IsRecognizedFeature() ||

is_virus =

;

(genome_val) {

organelle =

;

organelle =

;

organelle =

;

organelle =

;

organelle =

;

organelle =

;

organelle =

;

organelle =

;

organelle =

;

organelle =

;

organelle =

;

organelle =

;

string::size_type pos;

(

(

,

) != NCBI_NS_STD::string::npos

||

(

,

) != NCBI_NS_STD::string::npos) {

}

(

(

,

) != NCBI_NS_STD::string::npos) {

}

(

(

,

) != NCBI_NS_STD::string::npos) {

}

(

(

,

) != NCBI_NS_STD::string::npos) {

}

(

(

,

) != NCBI_NS_STD::string::npos) {

}

(

(

,

) != NCBI_NS_STD::string::npos) {

}

((pos =

(

,

)) != NCBI_NS_STD::string::npos

}

(

(

,

) != NCBI_NS_STD::string::npos) {

}

(

(

,

) != NCBI_NS_STD::string::npos) {

pluralize =

;

product_flag_to_use;

(

(feature_clauses,

) != NCBI_NS_STD::string::npos) {

string::size_type pos =

(feature_clauses,

);

(pos != NCBI_NS_STD::string::npos

&&

(feature_clauses,

, pos + 4) != NCBI_NS_STD::string::npos) {

genome_from_mods;

note = (*subSrcI)->GetName();

genome_from_mods = note;

ending =

;

ending =

+ ending;

ending =

+ genome_from_mods;

ending =

;

ending =

+ ending +

;

ending =

+ ending +

;

ending =

;

ending =

+ ending +

;

end =

;

end =

;

end =

;

end =

;

end =

;

is_mRNA =

;

(desc->GetMolinfo().CanGetBiomol()

feature_clauses;

feature_clauses =

+ organelle;

feature_clauses =

+ biomol;

feature_clauses;

feature_clauses;

(listAllFeatures) {

(; annot_ci; ++annot_ci) {

(numGenes + numCDSs > 100) {

feature_clauses;

feature_clauses =

+ feature_clauses;

ending =

;

ending +=

;

feature_clauses += ending;

feature_clauses =

;

feature_clauses +=

;

feature_clauses;

keyword =

;

keyword =

;

start = s.begin();

}

(std::distance(start, end) > 0 &&

(*end));

sequence::CDeflineGenerator()

.GenerateDefline(bh,

sequence::CDeflineGenerator::fIgnoreExisting |

sequence::CDeflineGenerator::fAllProteinNames);

org_desc =

;

(org_desc.length() > 0 &&

(org_desc.c_str()[0])) {

first_letter = org_desc.substr(0, 1);

remainder = org_desc.substr(1);

org_desc = first_letter + remainder;

key_org =

(keyword + org_desc);

feature_clauses =

(feature_clauses);

keyword + org_desc + feature_clauses;

keyword + org_desc +

+ feature_clauses;

keyword + org_desc +

+ feature_clauses;

keyword + org_desc;

sequence::CDeflineGenerator()

.GenerateDefline(bh,

sequence::CDeflineGenerator::fIgnoreExisting);

org_desc =

;

mod_combo->InitFromOptions(

);

org_desc = mod_combo->GetSourceDescriptionString(bsrc);

(org_desc.length() > 0 &&

(org_desc.c_str()[0])) {

first_letter = org_desc.substr(0, 1);

remainder = org_desc.substr(1);

org_desc = first_letter + remainder;

keyword + org_desc + feature_clauses;

modifier_list.clear();

(

k = 0; k < modifier_list.size(); k++) {

(

&& !options) {

(; b_iter; ++b_iter) {

(b_iter->

()) {

found_existing =

;

((*it)->IsTitle()) {

(*it)->SetTitle(defline);

found_existing =

;

(!found_existing) {

beh.

().Set().push_back(new_desc);

((*f)->IsSetLabel() && (*f)->GetLabel().IsStr() &&

(*f)->IsSetData() && (*f)->GetData().IsStr()) {

((*it)->IsSetData() && (*it)->GetData().IsStr() &&

(*it)->IsSetLabel() && (*it)->GetLabel().IsStr()) {

&

= (*it)->GetLabel().GetStr();

locus_name = (*it)->GetData().GetStr();

allele = (*it)->GetData().GetStr();

repeat = (*it)->GetData().GetStr();

flanking = (*it)->GetData().GetStr();

assay = (*it)->GetData().GetStr();

clause =

+ locus_name +

+ allele +

+ repeat;

(

->IsSetDbxref()) {

((*db)->IsSetDb() &&

((*db)->GetDb(),

) &&

(*db)->IsSetTag()) {

((*db)->GetTag().IsStr()) {

clause +=

+ (*db)->GetTag().GetStr();

}

((*db)->GetTag().IsId()) {

(flanking !=

) {

clause +=

+ flanking;

clause +=

+ assay;

clause +=

;

lengthBasedAllele;

bracketedRecordSeq;

((*it)->IsSetData() && (*it)->GetData().IsStr() &&

(*it)->IsSetLabel() && (*it)->GetLabel().IsStr()) {

&

= (*it)->GetLabel().GetStr();

locusName = (*it)->GetData().GetStr();

lengthBasedAllele = (*it)->GetData().GetStr();

bracketedRecordSeq = (*it)->GetData().GetStr();

assayCode = (*it)->GetData().GetStr();

clause =

+ locusName +

+ lengthBasedAllele +

+ bracketedRecordSeq;

(assayCode !=

) {

clause +=

+ assayCode;

clause +=

;

(

& modifier : modifiers) {

(modifier.IsOrgMod() && is_org_mod) {

(modifier.GetOrgModType() == subtype) {

(modifier.AllPresent()) {

(modifier.AnyPresent() && !require_all) {

modifier.SetRequested(

);

(!modifier.IsOrgMod() && !is_org_mod) {

(modifier.GetSubSourceType() == subtype) {

(modifier.AllPresent()) {

(modifier.AnyPresent() && !require_all) {

modifier.SetRequested(

);

src_combo->GetAvailableModifiers(modifiers);

is_orgmod[] = {

,

,

,

,

,

,

,

,

,

};

num_subtypes =

(subtypes) /

(

);

found =

;

(

= 0;

< num_subtypes && !found;

++) {

(

= 0;

< num_subtypes && !found;

++) {

(!src_combo->AreFeatureClausesUnique()) {

(

&modifier : modifiers) {

(modifier.AnyPresent()) {

(modifier.IsOrgMod()) {

(src_combo->HasOrgMod(modifier.GetOrgModType())) {

modifier.SetRequested(

);

(src_combo->HasSubSource(modifier.GetSubSourceType())) {

modifier.SetRequested(

);

(

&it : modifiers) {

(it.IsRequested()) {

(it.IsOrgMod()) {

options.

(it.GetOrgModType());

User-defined methods of the data storage class.

User-defined methods of the data storage class.

std::string x_trim(const std::string &s)

static bool s_IsBioseqGenomic(CBioseq_Handle bsh)

static unsigned int s_GetProductFlagFromCDSProductNames(CBioseq_Handle bh)

bool IsBioseqmRNA(CBioseq_Handle bsh)

bool IsInGenProdSet(CBioseq_Handle bh)

static bool s_IsRefSeq(CBioseq_Handle bsh)

string OrganelleByGenome(unsigned int genome_val)

CConstRef< CUser_object > s_GetOptionsForSet(CBioseq_set_Handle set)

bool s_HasPromoter(CBioseq_Handle bh)

bool s_NeedFeatureClause(const CBioseq &b)

bool s_ChooseModInModList(bool is_org_mod, int subtype, bool require_all, CAutoDefSourceDescription::TAvailableModifierVector &modifiers)

vector< CRef< CAutoDefFeatureClause > > FeatureClauseFactory(CBioseq_Handle bh, const CSeq_feat &cf, const CSeq_loc &mapped_loc, const CAutoDefOptions &opts, bool is_single_misc_feat)

void RemoveFeaturesInmRNAsByType(unsigned int feature_type, bool except_promoter=false)

void GroupConsecutiveExons(CBioseq_Handle bh)

virtual CSeqFeatData::ESubtype GetMainFeatureSubtype() const

void RemoveFeaturesByType(unsigned int feature_type, bool except_promoter=false)

void ConsolidateRepeatedClauses(bool suppress_allele)

string ListClauses(bool allow_semicolons, bool suppress_final_and, bool suppress_allele)

void GroupGenes(bool suppress_allele)

void RemoveFeaturesUnderType(unsigned int feature_type)

bool IsFeatureTypeLonely(unsigned int feature_type) const

virtual bool IsBioseqPrecursorRNA() const

void GroupClauses(bool gene_cluster_opp_strand)

virtual void AddSubclause(CRef< CAutoDefFeatureClause_Base > subclause)

void GroupmRNAs(bool suppress_allele)

void RemoveBioseqPrecursorRNAs()

void GroupSegmentedCDSs(bool suppress_allele)

void AssignGeneProductNames(CAutoDefFeatureClause_Base *main_clause, bool suppress_allele)

size_t GetNumSubclauses()

virtual void SuppressMobileElementAndInsertionSequenceSubfeatures()

void RemoveUnwantedExons()

virtual void ReverseCDSClauseLists()

void GroupAltSplicedExons(CBioseq_Handle bh)

void RemoveGenesMentionedElsewhere()

void FindAltSplices(bool suppress_allele)

virtual void Label(bool suppress_allele)

void RemoveDeletedSubclauses()

void RemoveOptionalMobileElements()

virtual bool IsPromoter() const

bool HasSubSource(CSubSource::ESubtype st)

void AddSource(const CBioSource &bs, const string &feature_clauses="")

void GetAvailableModifiers(CAutoDefSourceDescription::TAvailableModifierVector &modifier_list)

bool HasOrgMod(COrgMod::ESubtype st)

void AddOrgMod(COrgMod::ESubtype st, bool even_if_not_uniquifying=false)

string GetSourceDescriptionString(const CBioSource &bsrc)

void AddSubsource(CSubSource::ESubtype st, bool even_if_not_uniquifying=false)

bool GetDefaultExcludeSp()

void SetOptions(const CAutoDefOptions &options)

void SetExcludeSpOrgs(bool exclude)

void InitOptions(CAutoDefOptions &options) const

void SuppressAllFeatures()

bool GetAltSpliceFlag() const

bool GetKeepuORFs() const

bool GetKeepRegulatoryFeatures() const

bool GetKeepExons() const

void SuppressFeature(CSeqFeatData::ESubtype subtype)

void AddOrgMod(COrgMod::TSubtype subtype)

@ eWholeGenomeShotgunSequence

bool GetSuppressMiscFeatureSubfeatures() const

CRef< CUser_object > MakeUserObject() const

void InitFromUserObject(const CUser_object &obj)

bool GetGeneClusterOppStrand() const

bool GetKeepIntrons() const

string GetCustomFeatureClause() const

bool GetSuppressMobileElementSubfeatures() const

bool GetKeepPrecursorRNA() const

TFeatureListType GetFeatureListType() const

bool GetKeep3UTRs() const

bool GetKeep5UTRs() const

bool GetSuppressAlleles() const

bool GetSuppressFeatureAltSplice() const

CBioSource::TGenome GetNuclearCopyFlag() const

bool GetKeepRepeatRegion() const

CBioSource::TGenome GetProductFlag() const

bool GetKeepMiscRecomb() const

bool GetSpecifyNuclearProduct() const

void AddSubSource(CSubSource::TSubtype subtype)

bool IsFeatureSuppressed(CSeqFeatData::ESubtype subtype) const

bool GetUseFakePromoters() const

bool GetKeepMobileElements() const

vector< CAutoDefSourceModifierInfo > TModifierVector

vector< CAutoDefAvailableModifier > TAvailableModifierVector

void GetAvailableModifiers(TAvailableModifierSet &mod_set)

bool x_IsSingleMiscFeat(CFeat_CI feat_ci)

vector< CConstRef< objects::CBioSource > > TSources

string GetOneSourceDescription(const CBioseq_Handle &bh)

string x_GetNonFeatureListEnding()

CAutoDefModifierCombo m_OrigModCombo

static string GetKeywordPrefix(CBioseq_Handle bh)

bool x_IsFeatureSuppressed(CSeqFeatData::ESubtype subtype)

bool x_Is5SList(CFeat_CI feat_ci)

bool x_IsSubSrcRequired(unsigned int mod_type)

static CRef< CUser_object > CreateIDOptions(CSeq_entry_Handle seh)

void GetMasterLocation(CBioseq_Handle &bh, CRange< TSeqPos > &range)

void SetOptionsObject(const CUser_object &user)

bool x_IsOrgModRequired(unsigned int mod_type)

void AddDescriptors(const TSources &sources)

void AddSources(CSeq_entry_Handle se)

string x_GetHumanSTRFeatureClauses(CBioseq_Handle bh, const CUser_object &comment)

unsigned int GetNumAvailableModifiers()

bool x_IsHumanSTR(const CUser_object &obj)

CRef< CUser_object > GetOptionsObject() const

string x_GetFeatureClauseProductEnding(const string &feature_clauses, CBioseq_Handle bh)

CRef< feature::CFeatTree > m_Feat_Tree

void SetOptions(const CAutoDefModifierCombo &mod_combo)

string x_GetOneNonFeatureClause(CBioseq_Handle bh, unsigned int genome_val)

CAutoDefOptions m_Options

void x_SortModifierListByRank(TModifierIndexVector &index_list, CAutoDefSourceDescription::TAvailableModifierVector &modifier_list)

string GetOneDefLine(CAutoDefModifierCombo *mod_combo, const CBioseq_Handle &bh, CRef< feature::CFeatTree > featTree=null)

string x_GetHumanSTRv2FeatureClauses(CBioseq_Handle bh, const CUser_object &comment)

void x_GetModifierIndexList(TModifierIndexVector &index_list, CAutoDefSourceDescription::TAvailableModifierVector &modifier_list)

CRef< CAutoDefModifierCombo > FindBestModifierCombo()

static bool RegenerateSequenceDefLines(CSeq_entry_Handle se)

string x_GetFeatureClauses(const CBioseq_Handle &bh)

void x_RemoveOptionalFeatures(CAutoDefFeatureClause_Base *main_clause, const CBioseq_Handle &bh)

void SuppressFeature(const objects::CFeatListItem &feat)

bool IsSegment(const CBioseq_Handle &bh)

CAutoDefModifierCombo * GetEmptyCombo()

CAutoDefModifierCombo * GetAllModifierCombo()

vector< unsigned int > TModifierIndexVector

string GetOneFeatureClauseList(CBioseq_Handle bh, unsigned int genome_val)

static string RegenerateDefLine(CBioseq_Handle bh)

vector< CRef< CAutoDefModifierCombo > > TModifierComboVector

static string GetBiomolName(CMolInfo::TBiomol biomol)

const string & GetDivision(void) const

bool IsSetDivision(void) const

ESubtype GetSubtype(void) const

namespace ncbi::objects::

@ eObjectType_StructuredComment

@ eObjectType_AutodefOptions

EObjectType GetObjectType() const

iterator_bool insert(const value_type &val)

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define NON_CONST_ITERATE(Type, Var, Cont)

Non constant version of ITERATE macro.

virtual void Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)

Optimized implementation of CSerialObject::Assign, which is not so efficient.

static int BestRank(const CRef< CSeq_id > &id)

string GetLabel(const CSeq_id &id)

CMappedFeat GetBestOverlappingFeat(const CMappedFeat &feat, CSeqFeatData::ESubtype need_subtype, sequence::EOverlapType overlap_type, CFeatTree *feat_tree=0, const SAnnotSelector *base_sel=0)

@ fFGL_Content

Include its content if there is any.

@ eOverlap_Simple

any overlap of extremes

bool IsSetComment(void) const

bool CanGetInst_Repr(void) const

CConstRef< CBioseq > GetCompleteBioseq(void) const

Get the complete bioseq.

TClass GetClass(void) const

CBioseq_set_Handle GetParentBioseq_set(void) const

Return a handle for the parent Bioseq-set, or null handle.

CSeq_entry_Handle GetParentEntry(void) const

Get parent Seq-entry handle.

void SetDescr(TDescr &v) const

TBioseqCore GetBioseqCore(void) const

Get bioseq core structure.

bool CanGetClass(void) const

const CSeqFeatData & GetData(void) const

bool CanGetInst(void) const

TSeqPos GetBioseqLength(void) const

CConstRef< CSeq_annot > GetCompleteSeq_annot(void) const

Complete and return const reference to the current seq-annot.

CBioseq_set_Handle GetParentBioseq_set(void) const

Return a handle for the parent Bioseq-set, or null handle.

bool IsSetProduct(void) const

const string & GetComment(void) const

TInst_Length GetInst_Length(void) const

bool IsSetClass(void) const

TInst_Repr GetInst_Repr(void) const

CScope & GetScope(void) const

Get scope this handle belongs to.

CSeq_entry_Handle GetParentEntry(void) const

Get parent Seq-entry handle.

const TId & GetId(void) const

const TInst & GetInst(void) const

const CSeq_feat & GetOriginalFeature(void) const

Get original feature with unmapped location/product.

const CSeq_feat & GetMappedFeature(void) const

Feature mapped to the master sequence.

const CSeq_loc & GetProduct(void) const

CConstRef< CSeq_feat > GetSeq_feat(void) const

Get current seq-feat.

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

static bool IsBlank(const CTempString str, SIZE_TYPE pos=0)

Check if a string is blank (has no text).

static SIZE_TYPE Find(const CTempString str, const CTempString pattern, ECase use_case=eCase, EDirection direction=eForwardSearch, SIZE_TYPE occurrence=0)

Find the pattern in the string.

static bool StartsWith(const CTempString str, const CTempString start, ECase use_case=eCase)

Check if a string starts with a specified prefix value.

static bool EqualNocase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-insensitive equality of a substring with another string.

static enable_if< is_arithmetic< TNumeric >::value||is_convertible< TNumeric, Int8 >::value, string >::type NumericToString(TNumeric value, TNumToStringFlags flags=0, int base=10)

Convert numeric value to string.

static bool Equal(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2, ECase use_case=eCase)

Test for equality of a substring with another string.

static string & ToUpper(string &str)

Convert string to upper case – string& version.

C::value_type FindBestChoice(const C &container, F score_func)

Find the best choice (lowest score) for values in a container.

static const char label[]

const TKeywords & GetKeywords(void) const

Get the Keywords member data.

bool IsSetKeywords(void) const

Check if a value has been assigned to Keywords data member.

const TSubtype & GetSubtype(void) const

Get the Subtype member data.

TGenome GetGenome(void) const

Get the Genome member data.

bool CanGetSubtype(void) const

Check if it is safe to call GetSubtype method.

bool IsSetOrg(void) const

Check if a value has been assigned to Org data member.

list< CRef< CSubSource > > TSubtype

bool CanGetGenome(void) const

Check if it is safe to call GetGenome method.

const TOrg & GetOrg(void) const

Get the Org member data.

@ eSubtype_endogenous_virus_name

void SetFrom(TFrom value)

Assign a value to From data member.

void SetTo(TTo value)

Assign a value to To data member.

bool IsSetData(void) const

the object itself Check if a value has been assigned to Data data member.

const TData & GetData(void) const

Get the Data member data.

vector< CRef< CUser_field > > TData

@ eSubtype_specimen_voucher

@ eSubtype_culture_collection

bool IsSetExt(void) const

generic fields for ncRNA, tmRNA, miscRNA Check if a value has been assigned to Ext data member.

const TName & GetName(void) const

Get the variant data.

const TExt & GetExt(void) const

Get the Ext member data.

bool IsName(void) const

Check if variant Name is selected.

vector< CRef< CDbtag > > TDbxref

void SetLocation(TLocation &value)

Assign a value to Location data member.

const TLocation & GetLocation(void) const

Get the Location member data.

const TData & GetData(void) const

Get the Data member data.

const TRna & GetRna(void) const

Get the variant data.

@ e_not_set

No variant selected.

@ eClass_parts

parts for 2 or 3

@ eClass_gen_prod_set

genomic products, chrom+mRNA+protein

@ eClass_segset

segmented sequence + parts

list< CRef< CSeqdesc > > Tdata

const TUser & GetUser(void) const

Get the variant data.

TTitle & SetTitle(void)

Select the variant.

bool CanGetMol(void) const

Check if it is safe to call GetMol method.

const TSource & GetSource(void) const

Get the variant data.

bool IsSetBiomol(void) const

Check if a value has been assigned to Biomol data member.

const TId & GetId(void) const

Get the Id member data.

TTech GetTech(void) const

Get the Tech member data.

const TGenbank & GetGenbank(void) const

Get the variant data.

TMol GetMol(void) const

Get the Mol member data.

TBiomol GetBiomol(void) const

Get the Biomol member data.

bool IsSetTech(void) const

Check if a value has been assigned to Tech data member.

list< CRef< CSeq_annot > > TAnnot

const TMolinfo & GetMolinfo(void) const

Get the variant data.

@ eRepr_seg

segmented sequence

@ eRepr_raw

continuous sequence

@ eTech_tsa

transcriptome shotgun assembly

@ e_User

user defined object

@ e_Genbank

GenBank specific info.

@ e_Molinfo

info on the molecule and techniques

@ e_Source

source of materials, includes Org-ref

@ eMol_na

just a nucleic acid

constexpr auto sort(_Init &&init)

Miscellaneous common-use basic types and functionality.

#define FOR_EACH_SEQFEAT_ON_SEQANNOT(Itr, Var)

FOR_EACH_SEQFEAT_ON_SEQANNOT EDIT_EACH_SEQFEAT_ON_SEQANNOT.

#define NCBI_SEQID(Type)

@NAME Convenience macros for NCBI objects

bool operator()(const CRef< CAutoDefModifierCombo > &s1, const CRef< CAutoDefModifierCombo > &s2) const

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