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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/async__bioseq__info__base_8cpp_source.html below:

NCBI C++ ToolKit: src/app/pubseq_gateway/server/async_bioseq_info_base.cpp Source File

42 using namespace

std::placeholders;

50

shared_ptr<CPSGS_Request> request,

51

shared_ptr<CPSGS_Reply> reply,

54

m_FinishedCB(finished_cb),

56

m_NeedTrace(request->NeedTrace()),

59

m_WithSeqIdType(

true

)

78

unique_ptr<CCassBioseqInfoFetch> details;

93  if

(seq_id_type != -1)

97

bioseq_info_request.

SetGI

(gi);

102

sat_info_entry.connection,

103

sat_info_entry.keyspace,

106

details->SetLoader(fetch_task);

119  this

, _1, _2, _3, _4));

135  "Cassandra request: "

+

140  "Cassandra request for INSDC types: "

+

145

fetch_task->

Wait

();

158  string msg

= to_string(records.size()) +

" hit(s)"

;

159  for

(

const auto

& item : records) {

166  if

(records.empty()) {

180  m_Reply

->SendTrace(

"Report not found"

,

192  if

(records.size() == 1) {

218

to_string(records.size()) +

" bioseq info records were found however " 219  "it was impossible to choose one of them. So report as not found"

,

224  eDiag_Error

,

"Many bioseq info records found and not able to " 232  if

(records.size() == 1)

233

prefix =

"Selected record:\n"

;

235

prefix =

"Record selected in accordance to priorities (live & not HUP, dead & not HUP, HUP + largest gi/version):\n"

;

256

vector<CBioseqInfoRecord>&& records)

266  string msg

= to_string(records.size()) +

267  " hit(s); decision status: "

+ to_string(

decision

.status);

268  for

(

const auto

& item : records) {

277  m_Reply

->SendTrace(

"Report found"

,

292  m_Reply

->SendTrace(

"Report not found"

,

309  m_Reply

->SendTrace(

"Report not found"

,

327  eDiag_Error

,

"Unexpected decision code when a secondary INSCD " 328  "request results processed while retrieving bioseq info"

,

338  const string

& message)

function< void(SBioseqResolution &&async_bioseq_resolution)> TSeqIdResolutionFinishedCB

function< void(CRequestStatus::ECode status, int code, EDiagSev severity, const string &message, EPSGS_LoggingFlag logging_flag)> TSeqIdResolutionErrorCB

ssize_t SelectBioseqInfoRecord(const vector< CBioseqInfoRecord > &records)

CBioseqInfoFetchRequest & SetVersion(CBioseqInfoRecord::TVersion value)

CBioseqInfoFetchRequest & SetGI(CBioseqInfoRecord::TGI value)

CBioseqInfoFetchRequest & SetSeqIdType(CBioseqInfoRecord::TSeqIdType value)

CBioseqInfoFetchRequest & SetAccession(CBioseqInfoRecord::TAccession const &value)

TSeqIdType GetSeqIdType() const

TVersion GetVersion() const

TAccession const & GetAccession() const

void SetDataReadyCB(shared_ptr< CCassDataCallbackReceiver > callback)

void SetConsumeCallback(TBioseqInfoConsumeCallback callback)

void SetErrorCB(TDataErrorCallback error_cb)

void SetReadFinished(void)

CCassBlobWaiter * GetLoader(void)

@ ePSGS_BioseqInfoNotFound

@ ePSGS_BioseqInfoFoundMany

@ ePSGS_BioseqInfoFoundOne

void Increment(IPSGS_Processor *processor, EPSGS_CounterType counter)

CCassFetch * m_NoSeqIdTypeFetch

psg_time_point_t m_BioseqRequestStart

void x_OnBioseqInfoWithoutSeqIdType(vector< CBioseqInfoRecord > &&records)

TSeqIdResolutionErrorCB m_ErrorCB

virtual ~CPSGS_AsyncBioseqInfoBase()

CPSGS_AsyncBioseqInfoBase()

void x_OnBioseqInfo(vector< CBioseqInfoRecord > &&records)

void x_OnBioseqInfoError(CRequestStatus::ECode status, int code, EDiagSev severity, const string &message)

void MakeRequest(SBioseqResolution &&bioseq_resolution)

SBioseqResolution m_BioseqResolution

TSeqIdResolutionFinishedCB m_FinishedCB

list< unique_ptr< CCassFetch > > m_FetchDetails

CPSGSCounters & GetCounters(void)

static CPubseqGatewayApp * GetInstance(void)

SSatInfoEntry GetBioseqKeyspace(void) const

shared_ptr< CPSGS_Reply > m_Reply

shared_ptr< CPSGS_Request > m_Request

EDiagSev

Severity level for the posted diagnostics.

@ eDiag_Error

Error message.

@ e500_InternalServerError

SINSDCDecision DecideINSDC(const vector< CBioseqInfoRecord > &records, CBioseqInfoRecord::TVersion version)

bool IsINSDCSeqIdType(CBioseqInfoRecord::TSeqIdType seq_id_type)

const string version

version string

string StripTrailingVerticalBars(const string &seq_id)

string ToJsonString(const CBioseqInfoRecord &bioseq_info, SPSGS_ResolveRequest::TPSGS_BioseqIncludeData include_data_flags, const string &custom_blob_id)

@ ePSGS_BioseqInfoMultipleRecords

static SLJIT_INLINE sljit_ins msg(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

EPSGS_ResolutionResult m_ResolutionResult

CBioseqInfoRecord & GetBioseqInfo(void)

void SetBioseqInfo(const CBioseqInfoRecord &record)

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