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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/assemblytrackingpanel_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/widgets/edit/assembly_tracking_panel.cpp Source File

49 #include <wx/filedlg.h> 53 #include <wx/button.h> 54 #include <wx/msgdlg.h> 113

wxPanel::Create( parent,

id

, pos,

size

, style );

118

GetSizer()->SetSizeHints(

this

);

161

wxBoxSizer* itemBoxSizer2 =

new

wxBoxSizer(wxVERTICAL);

162

itemPanel1->SetSizer(itemBoxSizer2);

167

wxBoxSizer* itemBoxSizer4 =

new

wxBoxSizer(wxHORIZONTAL);

168

itemBoxSizer2->Add(itemBoxSizer4, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

170

wxButton* itemButton5 =

new

wxButton( itemPanel1,

ID_EXPORT_LIST_BTN

(

"Export TPA Accession List"

), wxDefaultPosition, wxDefaultSize, 0 );

171

itemBoxSizer4->Add(itemButton5, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

173

wxButton* itemButton6 =

new

wxButton( itemPanel1,

ID_EXPORT_INTERVALS_BTN

(

"Export Interval Table"

), wxDefaultPosition, wxDefaultSize, 0 );

174

itemBoxSizer4->Add(itemButton6, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

176

wxBoxSizer* itemBoxSizer7 =

new

wxBoxSizer(wxHORIZONTAL);

177

itemBoxSizer2->Add(itemBoxSizer7, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

179

wxButton* itemButton8 =

new

wxButton( itemPanel1,

ID_IMPORT_INTERVALS_BTN

(

"Import Interval Table"

), wxDefaultPosition, wxDefaultSize, 0 );

180

itemBoxSizer7->Add(itemButton8, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

182 m_PopulateBtn

new

wxButton( itemPanel1,

ID_POPULATE_BTN

(

"Populate Intervals from Assembly Alignment"

), wxDefaultPosition, wxDefaultSize, 0 );

183

itemBoxSizer7->Add(

m_PopulateBtn

, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

185

itemBoxSizer2->Add(380, 1, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 0);

234

TransferDataFromWindow();

236 if

table

|| !

table

->IsSetColumns() || !

table

->GetColumns()[0]->IsSetData() ||

table

->GetColumns()[0]->GetData().GetSize() == 0) {

237

wxMessageBox(

wxT

(

"No accessions listed"

wxT

(

"Error"

238

wxOK | wxICON_ERROR,

this

);

241

wxFileDialog table_save_file(

this

wxT

(

"Select a file"

), wxEmptyString, wxEmptyString,

wxT

(

"*.*"

242

wxFD_SAVE|wxFD_OVERWRITE_PROMPT);

244 if

(table_save_file.ShowModal() == wxID_OK)

246

wxString path = table_save_file.GetPath();

247

wxString name = table_save_file.GetFilename();

254

wxMessageBox(

wxT

(

"Please, select file name"

wxT

(

"Error"

255

wxOK | wxICON_ERROR,

this

);

260

wxMessageBox(

wxT

(

"Cannot open file "

)+ path,

wxT

(

"Error"

261

wxOK | wxICON_ERROR,

this

);

274

TransferDataFromWindow();

277

wxMessageBox(

wxT

(

"No accessions listed"

wxT

(

"Error"

278

wxOK | wxICON_ERROR,

this

);

281

wxFileDialog table_save_file(

this

wxT

(

"Select a file"

), wxEmptyString, wxEmptyString,

wxT

(

"*.*"

282

wxFD_SAVE|wxFD_OVERWRITE_PROMPT);

284 if

(table_save_file.ShowModal() == wxID_OK)

286

wxString path = table_save_file.GetPath();

287

wxString name = table_save_file.GetFilename();

294

wxMessageBox(

wxT

(

"Please, select file name"

wxT

(

"Error"

295

wxOK | wxICON_ERROR,

this

);

299

wxMessageBox(

wxT

(

"Cannot open file "

)+ path,

wxT

(

"Error"

300

wxOK | wxICON_ERROR,

this

);

313

wxFileDialog table_file(

this

wxT

(

"Select a file"

), wxEmptyString, wxEmptyString,

wxT

(

"*.*"

314

wxFD_OPEN|wxFD_FILE_MUST_EXIST);

316 if

(table_file.ShowModal() == wxID_OK)

318

wxString path = table_file.GetPath();

319

wxString name = table_file.GetFilename();

323

new_obj->

SetType

().SetStr(

"TpaAssembly"

);

327

wxMessageBox(

wxT

(

"Unable to read table"

wxT

(

"Error"

328

wxOK | wxICON_ERROR,

this

);

340 if

m_Seq

|| !

m_Seq

->IsSetInst() || !

m_Seq

->GetInst().IsSetHist()) {

346 if

(

m_User

->IsSetData()) {

351 if

((*ait)->IsSetSegs() && (*ait)->GetSegs().IsDenseg()

352

&& (*ait)->GetSegs().GetDenseg().IsSetDim() && (*ait)->GetSegs().GetDenseg().GetDim() > 1) {

357 if

(interval0 && interval1) {

358 string

accession =

""

;

365 m_User

->SetData().push_back(new_field);

367

}

catch

(

const CException

&) {}

catch

(

const

exception&) {}

389

TransferDataFromWindow();

397

user->

SetType

().SetStr(

"TpaAssembly"

);

423 m_User

->Assign(desc.GetUser());

426

TransferDataToWindow();

433

TransferDataFromWindow();

User-defined methods of the data storage class.

static bool ShowToolTips()

Should we show tooltips?

void OnImportIntervalsBtnClick(wxCommandEvent &event)

wxEVT_COMMAND_BUTTON_CLICKED event handler for ID_IMPORT_INTERVALS_BTN

CAssemblyTrackingPanel()

Constructors.

virtual void UpdateSeqdesc(objects::CSeqdesc &desc)

CAssemblyTrackingListPanel * m_AccessionsPanel

wxBitmap GetBitmapResource(const wxString &name)

Retrieves bitmap resources.

void Init()

Initialises member variables.

CRef< objects::CUser_object > GetUser_object()

virtual void ChangeSeqdesc(const objects::CSeqdesc &desc)

void SetUser_object(CRef< objects::CUser_object > user)

void OnExportListBtnClick(wxCommandEvent &event)

wxEVT_COMMAND_BUTTON_CLICKED event handler for ID_EXPORT_LIST_BTN

void SetBioseq(CConstRef< objects::CBioseq > seq)

wxIcon GetIconResource(const wxString &name)

Retrieves icon resources.

~CAssemblyTrackingPanel()

Destructor.

CConstRef< objects::CBioseq > m_Seq

void OnExportIntervalsBtnClick(wxCommandEvent &event)

wxEVT_COMMAND_BUTTON_CLICKED event handler for ID_EXPORT_INTERVALS_BTN

CRef< objects::CUser_object > m_User

@ ID_IMPORT_INTERVALS_BTN

@ ID_EXPORT_INTERVALS_BTN

bool Create(wxWindow *parent, wxWindowID id=ID_CASSEMBLYTRACKINGPANEL, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxSize(400, 300), long style=wxTAB_TRAVERSAL)

Creation.

void CreateControls()

Creates the controls and sizers.

void OnPopulateBtnClick(wxCommandEvent &event)

wxEVT_COMMAND_BUTTON_CLICKED event handler for ID_POPULATE_BTN

static CRef< objects::CUser_field > s_CreateTPAAssemblyField(const string &accession, int from, int to)

virtual bool TransferDataToWindow()

void SetUser_object(CRef< objects::CUser_object > user)

void PopulateFields(objects::CUser_object &user_obj)

virtual bool TransferDataFromWindow()

unsigned int TSeqPos

Type for sequence locations and lengths.

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

void swap(NCBI_NS_NCBI::pair_base_member< T1, T2 > &pair1, NCBI_NS_NCBI::pair_base_member< T1, T2 > &pair2)

virtual void Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)

Set object to copy of another one.

void GetLabel(string *label, ELabelType type=eDefault, TLabelFlags flags=fLabel_Default) const

Append a label for this Seq-id to the supplied string.

@ eContent

Untagged human-readable accession or the like.

void Reset(void)

Reset reference object.

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

void SetType(TType &value)

Assign a value to Type data member.

const TId & GetId(void) const

Get the Id member data.

TFrom GetFrom(void) const

Get the From member data.

bool IsSetStrand(void) const

Check if a value has been assigned to Strand data member.

TStrand GetStrand(void) const

Get the Strand member data.

TTo GetTo(void) const

Get the To member data.

list< CRef< CSeq_align > > TAssembly

<!DOCTYPE HTML >< html > n< header > n< title > PubSeq Gateway Help Page</title > n< style > n table

const struct ncbi::grid::netcache::search::fields::SIZE size

bool SaveTableFile(wxWindow *parent, wxString &save_file_dir, wxString &save_file_name, CRef< objects::CSeq_table > values_table)

CRef< objects::CSeq_table > SeqTableFromAssemblyFields(const objects::CUser_object &obj)

CRef< objects::CSeq_table > ReadTabDelimitedTable(const wxString &filename, bool read_header)

bool SaveTableRowAsListFile(const string &save_file_name, CRef< objects::CSeq_table > values_table, int col)

void AddAssemblyUserFieldsFromSeqTable(CRef< objects::CUser_object > obj, CRef< objects::CSeq_table > table)

string ToStdString(const wxString &s)

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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/assembly__tracking__panel_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/widgets/edit/assembly_tracking_panel.cpp Source File

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/assemblytrackingpanel_8cpp_source.html below: