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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/assembly__object__loader_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/widgets/loaders/assembly_object_loader.cpp Source File

54

: m_Accessions(accessions)

56  m_Descr

=

"Retrieving Gencoll assemblies: "

;

104  string

descr =

"Name: "

+

label

;

108

descr +=

" (full assembly)"

;

110

descr +=

" (assembly set)"

;

114

list< CRef<CDbtag> > ids;

120

}

else if

(gc_assm->

IsUnit

()) {

126  if

((*iter)->GetDb() ==

"GenColl"

&& (*iter)->GetTag().IsStr()) {

127

descr +=

"\nAccession: "

+ (*iter)->GetTag().GetStr();

129  if

((*iter)->GetDb() ==

"UCSC_name"

&& (*iter)->GetTag().IsStr()) {

130

descr +=

"\nUCSC name: "

+ (*iter)->GetTag().GetStr();

133

descr +=

"\nRelease type: "

;

134

descr += gc_assm->

IsRefSeq

() ?

"RefSeq"

:

"Genbank"

;

136  if

(desc->IsSetLong_name()) {

137

descr +=

"\nDescription: "

+ desc->GetLong_name();

139  if

(desc->IsSetDescr()) {

141  if

((*it)->IsSource()) {

142

descr +=

"\nOrganism: "

;

143  if

((*it)->GetSource().IsSetTaxname()) {

144

descr += (*it)->GetSource().GetTaxname();

146  if

((*it)->GetSource().IsSetCommon()) {

147

descr +=

" ("

+ (*it)->GetSource().GetCommon() +

")"

;

154  if

(

label

!= currAcc) {

164  catch

(

const

exception& e) {

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

string GetAccession() const

Retrieve the accession for this assembly.

bool IsRefSeq() const

Is this assembly a RefSeq assembly?

static void GetAssmsInfo(const TAssmAccs &assm_accs, const string &mode, TAssemblies &assemblies, IGencollSvcErrors *errors=nullptr)

query GenColl for assembly information, return list of assemblies mode is as described above for GetG...

void x_ShowErrorsDlg(const wxString &title)

void x_UpdateHTMLResults(const wxString &object, objects::ILineErrorListener *errCont, const string &exception="", const string &error_msg="", const wxString &objectName=wxT("File:"))

Interface for testing cancellation request in a long lasting operation.

vector< SObject > TObjects

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

const string & GetMsg(void) const

Get message string.

virtual const char * what(void) const noexcept

Standard report (includes full backlog).

virtual void ReportError(const string &accession, const string &error)

vector< string > m_Accessions

virtual string GetDescription() const

virtual bool Execute(ICanceled &canceled)

virtual bool PostExecute()

CAssemblyObjectLoader(const vector< string > &accessions)

virtual bool PreExecute()

virtual TObjects & GetObjects()

static void GetLabel(const CObject &obj, string *label, ELabelType type=eDefault)

static CRef< CObjectManager > GetInstance(void)

Return the existing object manager or create one.

void AddDefaults(TPriority pri=kPriority_Default)

Add default data loaders from object manager.

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

virtual bool IsCanceled(void) const =0

static const char label[]

const TId & GetId(void) const

Get the Id member data.

const TUnit & GetUnit(void) const

Get the variant data.

const TDesc & GetDesc(void) const

Get the Desc member data.

bool IsAssembly_set(void) const

Check if variant Assembly_set is selected.

const TAssemblies & GetAssemblies(void) const

Get the Assemblies member data.

const TDesc & GetDesc(void) const

Get the Desc member data.

const TAssembly_set & GetAssembly_set(void) const

Get the variant data.

TSet_type GetSet_type(void) const

Get the Set_type member data.

bool IsUnit(void) const

Check if variant Unit is selected.

TAssemblies & SetAssemblies(void)

Assign a value to Assemblies data member.

const TId & GetId(void) const

Get the Id member data.

@ eSet_type_full_assembly

full-assembly: set of asm-units

@ eSet_type_assembly_set

set of full-assemblies stopper

list< CRef< CSeqdesc > > Tdata

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