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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/asn__object__loader_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/widgets/loaders/asn_object_loader.cpp Source File

: m_AsnTextData(asnTextData)

;

wxString& fn = *it;

wxFileName::SplitPath(fn,

,

,

, &ext);

(ext.IsSameAs(

(

),

)) {

(

<<

);

err_msg = e.

();

vector<string> phrases;

(

exception& e) {

err_msg = e.

();

vector<string> phrases;

(

exception& e) {

unique_ptr<CObjectIStream>

.FindVariant(

)

.FindMember(

)

.FindMember(

)

.FindMember(

)

sinput->UseMemoryPool();

sniffer.

(ncbi::objects::CSeq_table::GetTypeInfo());

sniffer.

(*sinput);

(

*

(iter->GetPointer())) {

align_objs.push_back(*iter);

(

*

(iter->GetPointer())) {

feat_objs.push_back(*iter);

other_objs.push_back(*iter);

max_obj_prj = 10;

(align_objs.size() > max_obj_prj) {

aligns.push_back(align);

(!align_objs.empty()) {

(align_objs.begin(), align_objs.end(), back_inserter(other_objs));

(feat_objs.size() > max_obj_prj) {

feats.push_back(feat);

(!feat_objs.empty()) {

(feat_objs.begin(), feat_objs.end(), back_inserter(other_objs));

annot_name = annot_title.empty() ?

: annot_title;

(it->IsName() && it->GetName().empty())

it->SetName(annot_name);

se->

(*bioseq_set);

.SetFileName(filePath);

: m_ObjLevel(0), m_Loader(loader), m_ObjectLoaded(

)

.insert(cand->type_info.GetTypeInfo()->GetName());

vector<string> modules;

modules.push_back(

);

modules.push_back(

);

modules.push_back(

);

modules.push_back(

);

modules.push_back(

);

modules.push_back(

);

modules.push_back(

);

modules.push_back(

);

modules.push_back(

);

modules.push_back(

);

(vector<string>, module, modules) {

vector<IAsnLoadExtension*> extensions;

(vector<IAsnLoadExtension*>, it, extensions)

(*it)->RegisterAsnTypes(*

);

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

void NCBI_BioTree_RegisterModuleClasses(void)

void NCBI_Entrezgene_RegisterModuleClasses(void)

void NCBI_GUI_Project_RegisterModuleClasses(void)

void NCBI_PubMed_RegisterModuleClasses(void)

void NCBI_Seqalign_RegisterModuleClasses(void)

void NCBI_Seqfeat_RegisterModuleClasses(void)

void NCBI_Seqloc_RegisterModuleClasses(void)

void NCBI_Seqset_RegisterModuleClasses(void)

void NCBI_Sequence_RegisterModuleClasses(void)

void NCBI_Submit_RegisterModuleClasses(void)

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

#define EXT_POINT__ASN_LOAD_EXTENSION

static const wxChar * kMemoryObject

EFormat

The formats are checked in the same order as declared here.

@ eBinaryASN

Binary ASN.1.

@ eUnknown

unknown format

Serialized objects sniffer.

const TCandidates & GetCandidates() const

Return reference on the internal vector of object candidates.

vector< SCandidateInfo > TCandidates

void SetReportDataErrors(bool report=true)

Report syntax errors to client (as an exception)

void AddCandidate(CObjectTypeInfo ti, EEventCallBackMode emode=eCallAlways)

Add new possible type to the recognition list.

void Probe(CObjectIStream &input)

The main worker function.

void x_ShowErrorsDlg(const wxString &title)

void x_UpdateHTMLResults(const wxString &object, objects::ILineErrorListener *errCont, const string &exception="", const string &error_msg="", const wxString &objectName=wxT("File:"))

void SetNameDesc(const string &name)

void SetTitleDesc(const string &title)

namespace ncbi::objects::

Base class for all serializable objects.

Class CSniffReader reads NCBI object files in number of different formats.

virtual void OnTopObjectFoundPre(const CObjectInfo &object, CNcbiStreampos stream_pos)

virtual void OnObjectFoundPost(const CObjectInfo &object)

Event handling virtual function, called when candidate is found and deserialized.

bool ObjectLoaded() const

virtual void OnTopObjectFoundPre(const CObjectInfo &object, CNcbiStreampos stream_pos)

CAsnObjectLoader & m_Loader

virtual void Register(CObjectTypeInfo ti)

IAsnLoadRegister implementation.

virtual void OnObjectFoundPre(const CObjectInfo &object, CNcbiStreampos stream_pos)

Event handling virtual function, called when candidate is found but before deserialization.

virtual void OnTopObjectFoundPost(const CObjectInfo &object)

virtual void OnTopObjectFoundPost(const CObjectInfo &object)

virtual void OnObjectFoundPost(const CObjectInfo &object)

Event handling virtual function, called when candidate is found and deserialized.

virtual void Reset()

Event indicates that sniffer objects needs to reset it's status and get ready for the next probing.

virtual void Reset()

Event indicates that sniffer objects needs to reset it's status and get ready for the next probing.

virtual void OnObjectFoundPre(const CObjectInfo &object, CNcbiStreampos stream_pos)

Event handling virtual function, called when candidate is found but before deserialization.

CSniffReader(list< CRef< CSerialObject > > &Results)

CTypeInfo class contains all information about C++ types (both basic and classes): members and layout...

Template class for iteration on objects of class C.

IAsnLoadRegister - interface to register ASN types that could be loaded by ASN loader.

Interface for testing cancellation request in a long lasting operation.

vector< SObject > TObjects

static const struct type types[]

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define NON_CONST_ITERATE(Type, Var, Cont)

Non constant version of ITERATE macro.

#define LOG_POST(message)

This macro is deprecated and it's strongly recomended to move in all projects (except tests) to macro...

virtual const char * what(void) const noexcept

Standard report (includes full backlog).

void Info(CExceptionArgs_Base &args)

virtual bool Execute(ICanceled &canceled)

wxString m_CurrentFileName

bool x_OnTopObjectFound(const CObjectInfo &objInfo)

virtual bool PostExecute()

virtual bool PreExecute()

const string m_AsnTextData

vector< wxString > m_FileNames

TOrigObjects m_OrigObjects

Original object list for current file.

CRef< objects::CScope > m_Scope

virtual TObjects & GetObjects()

void LoadFromStream(CNcbiIstream &istr, TObjects &objects, ESerialDataFormat fmt, ICanceled *canceled=0)

vector< CRef< CObject > > TOrigObjects

virtual string GetDescription() const

TObjects m_Objects

Final complete object list with description set.

static void GetLabel(const CObject &obj, string *label, ELabelType type=eDefault)

void GetExtensionAsInterface(const string &ext_point_id, vector< CIRef< I > > &interfaces)

GetExtensionAsInterface() is a helper function that extracts all extensions implementing the specifie...

ESerialDataFormat

Data file format.

@ eSerial_AsnText

ASN.1 text.

@ eSerial_AsnBinary

ASN.1 binary.

TObjectPtr GetObjectPtr(void) const

Get pointer to object.

static CObjectIStream * Open(ESerialDataFormat format, CNcbiIstream &inStream, bool deleteInStream)

Create serial object reader and attach it to an input stream.

ETypeFamily GetTypeFamily(void) const

Get data type family.

static CRef< CObjectManager > GetInstance(void)

Return the existing object manager or create one.

TObjectType * GetPointer(void) THROWS_NONE

Get pointer,.

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

virtual bool IsCanceled(void) const =0

IO_PREFIX::istream CNcbiIstream

Portable alias for istream.

IO_PREFIX::streampos CNcbiStreampos

Portable alias for streampos.

static list< string > & Split(const CTempString str, const CTempString delim, list< string > &arr, TSplitFlags flags=0, vector< SIZE_TYPE > *token_pos=NULL)

Split a string using specified delimiters.

static void GetRegisteredClassNames(const string &module, TRegClasses &names)

static TTypeInfo GetClassInfoByName(const string &name)

static const char label[]

void SetLabel(const TLabel &value)

Assign a value to Label data member.

bool IsSetLabel(void) const

bio-tree label (short name) Check if a value has been assigned to Label data member.

const TLabel & GetLabel(void) const

Get the Label member data.

TSet & SetSet(void)

Select the variant.

TSeq & SetSeq(void)

Select the variant.

void SetData(TData &value)

Assign a value to Data data member.

list< CRef< CSeq_align > > TAlign

list< CRef< CSeq_feat > > TFtable

void copy(Njn::Matrix< S > *matrix_, const Njn::Matrix< T > &matrix0_)

static const char * type_name(CS_INT value)

string ToStdString(const wxString &s)

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