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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/asn__cache__util_8cpp_source.html below:

NCBI C++ ToolKit: src/objtools/data_loaders/asn_cache/asn_cache_util.cpp Source File

(

.IsGeneral()) {

id_str +=

.GetGeneral().GetDb();

dump_index_stream( file_path.c_str(), std::ios::binary );

( dump_index_stream ) {

(entry->

()){

(

.

()->Match(**it)){

bioseq = &entry->

();

void ReadThroughFile(const std::string &file_path)

void GetNormalizedSeqId(const CSeq_id &id, string &id_str, Uint4 &version)

CConstRef< CBioseq > ExtractBioseq(CConstRef< CSeq_entry > entry, const CSeq_id_Handle &id)

Extract bioseq with given id from entry.

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

@ fLabel_GeneralDbIsContent

For type general, use the database name as the tag and the (text or numeric) key as the content.

@ eContent

Untagged human-readable accession or the like.

@ eType

FASTA-style type, or database in GeneralDbIsContent mode.

uint32_t Uint4

4-byte (32-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

IO_PREFIX::ifstream CNcbiIfstream

Portable alias for ifstream.

static string & ToLower(string &str)

Convert string to lower case – string& version.

X * NotNull(X *object)

Check for not null value (after C malloc, strdup etc.).

TVersion GetVersion(void) const

Get the Version member data.

bool IsSetVersion(void) const

Check if a value has been assigned to Version data member.

const TSeq & GetSeq(void) const

Get the variant data.

const TSet & GetSet(void) const

Get the variant data.

bool IsSet(void) const

Check if variant Set is selected.

const TSeq_set & GetSeq_set(void) const

Get the Seq_set member data.

list< CRef< CSeq_entry > > TSeq_set

const TId & GetId(void) const

Get the Id member data.

list< CRef< CSeq_id > > TId

const string version

version string

const SIZE_TYPE kBufferSize

static bool GetSeqId(const T &d, set< string > &labels, const string name="", bool detect=false, bool found=false)

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