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NCBI C++ ToolKit: src/objtools/edit/apply_object.cpp Source File

m_SEH = bsh.GetParentEntry();

(!desc.IsMolinfo() && !desc.IsTitle()) {

m_Original.

(&desc);

new_desc->

(subtype);

}

(orig_feat) {

}

(orig_inst) {

change_desc->

(*desc);

(parent_entry.

()

(; annot_ci; ++annot_ci) {

((*annot_ci).IsFtable()) {

new_annot->

().SetFtable();

(; annot_ci; ++annot_ci) {

((*annot_ci).IsFtable()) {

(entry_ci->IsSetDescr()) {

(dit->GetPointer() == &seq_desc) {

CSeq_entry_Handle GetSeqEntryForSeqdesc(CRef< CScope > scope, const CSeqdesc &seq_desc)

CApplyObject(CSeq_entry_Handle seh, CConstRef< CObject > orig, CRef< CObject > editable)

CConstRef< CObject > m_Original

CRef< CObject > m_Editable

CSeq_feat_EditHandle –.

namespace ncbi::objects::

Include a standard set of the NCBI C++ Toolkit most basic headers.

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

virtual void Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)

Set object to copy of another one.

CBioseq_Handle GetBioseqHandle(const CSeq_id &id)

Get bioseq handle by seq-id.

void GetAllTSEs(TTSE_Handles &tses, enum ETSEKind kind=eManualTSEs)

CSeq_feat_Handle GetSeq_featHandle(const CSeq_feat &feat, EMissing action=eMissing_Default)

vector< CSeq_entry_Handle > TTSE_Handles

CConstRef< CBioseq > GetCompleteBioseq(void) const

Get the complete bioseq.

TClass GetClass(void) const

const CSeq_annot_Handle & GetAnnot(void) const

Get handle to seq-annot for this feature.

CRef< CSeqdesc > RemoveSeqdesc(const CSeqdesc &v) const

CBioseq_set_Handle GetParentBioseq_set(void) const

Return a handle for the parent Bioseq-set, or null handle.

CSeq_entry_Handle GetParentEntry(void) const

Get parent Seq-entry handle.

const CSeqFeatData & GetData(void) const

CSeq_annot_EditHandle AttachAnnot(CSeq_annot &annot) const

Attach an annotation.

void Remove(void) const

Remove the feature from Seq-annot.

CSeq_feat_EditHandle AddFeat(const CSeq_feat &new_obj) const

CBioseq_set_Handle GetParentBioseq_set(void) const

Return a handle for the parent Bioseq-set, or null handle.

bool IsSetProduct(void) const

void SetInst(TInst &v) const

CBioseq_set_Handle GetParentBioseq_set(void) const

Get parent bioseq-set handle.

CSeq_entry_Handle GetParentEntry(void) const

Get parent Seq-entry handle.

CSeq_entry_EditHandle GetEditHandle(void) const

Get 'edit' version of handle.

CBioseq_EditHandle GetEditHandle(void) const

Get 'edit' version of handle.

CSeq_entry_Handle GetParentEntry(void) const

Return a handle for the parent seq-entry of the bioseq.

bool IsSetClass(void) const

CScope & GetScope(void) const

Get scope this handle belongs to.

CSeq_feat_EditHandle TakeFeat(const CSeq_feat_EditHandle &handle) const

CSeq_annot_EditHandle GetAnnot(void) const

void Reset(void)

Reset handle and make it not to point to any seq-entry.

void Replace(const CSeq_feat &new_feat) const

Replace the feature with new Seq-feat object.

bool AddSeqdesc(CSeqdesc &v) const

bool IsSetData(void) const

CSeq_entry_EditHandle GetParentEntry(void) const

Navigate object tree.

@ fIncludeGivenEntry

Include the top (given) entry.

@ fRecursive

Iterate recursively.

TObjectType * GetPointer(void) const THROWS_NONE

Get pointer,.

TObjectType * GetPointer(void) THROWS_NONE

Get pointer,.

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

void SetType(TType &value)

Assign a value to Type data member.

bool IsSetData(void) const

the specific data Check if a value has been assigned to Data data member.

bool IsCdregion(void) const

Check if variant Cdregion is selected.

const TData & GetData(void) const

Get the Data member data.

const TProduct & GetProduct(void) const

Get the Product member data.

bool IsSetProduct(void) const

product of process Check if a value has been assigned to Product data member.

@ eClass_nuc_prot

nuc acid and coded proteins

void SetData(TData &value)

Assign a value to Data data member.

list< CRef< CSeqdesc > > Tdata

void Select(E_Choice index, EResetVariant reset=eDoResetVariant)

Select the requested variant if needed.

E_Choice

Choice variants.

TUser & SetUser(void)

Select the variant.

@ e_Molinfo

info on the molecule and techniques

@ e_Title

a title for this sequence

Portable reference counted smart and weak pointers using CWeakRef, CRef, CObject and CObjectEx.

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