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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/append__mod__to__org_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/packages/pkg_sequence_edit/append_mod_to_org.cpp Source File

new_feat->

(feat_it->GetOriginalFeature());

((*it)->IsSource()) {

new_desc->

(orig_desc);

modified =

;

ok_to_add =

;

((*orgmod)->IsSetSubtype() && (*orgmod)->IsSetSubname() && (*orgmod)->GetSubtype() ==

)

str_to_add = (*orgmod)->GetSubname();

((*subsource)->IsSetSubtype() && (*subsource)->IsSetName() && (*subsource)->GetSubtype() ==

)

str_to_add = (*subsource)->GetName();

(!str_to_add.empty())

influenza =

;

& taxname = biosource.

().SetTaxname();

& taxname = biosource.

().SetTaxname();

= taxname +

;

remove_taxref =

;

remove_taxref =

;

biosource.

().SetTaxname() =

;

CRef< CEditingActionConstraint > m_constraint

CRef< CCmdComposite > GetCommand(objects::CSeq_entry_Handle tse)

CRef< objects::CScope > m_Scope

bool x_ApplyToBioSource(objects::CBioSource &biosource)

void x_ApplyToDescriptors(const objects::CSeq_entry &se, CCmdComposite *composite)

void apply_to_seq_and_feat(objects::CSeq_entry_Handle tse, CCmdComposite *composite)

const string & GetTaxname(void) const

bool IsSetTaxname(void) const

void AddCommand(IEditCommand &command)

virtual bool Match(const string &value)

namespace ncbi::objects::

static const char * str(char *buf, int n)

void CleanupForTaxnameChange(CObjectInfo oi)

virtual void Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)

Set object to copy of another one.

CConstRef< CSeq_entry > GetCompleteSeq_entry(void) const

Complete and get const reference to the seq-entry.

CScope & GetScope(void) const

Get scope this handle belongs to.

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static bool EndsWith(const CTempString str, const CTempString end, ECase use_case=eCase)

Check if a string ends with a specified suffix value.

static void TruncateSpacesInPlace(string &str, ETrunc where=eTrunc_Both)

Truncate whitespace in a string (in-place)

static bool StartsWith(const CTempString str, const CTempString start, ECase use_case=eCase)

Check if a string starts with a specified prefix value.

static bool Equal(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2, ECase use_case=eCase)

Test for equality of a substring with another string.

static string & ReplaceInPlace(string &src, const string &search, const string &replace, SIZE_TYPE start_pos=0, SIZE_TYPE max_replace=0, SIZE_TYPE *num_replace=0)

Replace occurrences of a substring within a string.

@ eNocase

Case insensitive compare.

bool IsSetOrg(void) const

Check if a value has been assigned to Org data member.

bool IsSetSubtype(void) const

Check if a value has been assigned to Subtype data member.

const TOrg & GetOrg(void) const

Get the Org member data.

void SetOrg(TOrg &value)

Assign a value to Org data member.

bool IsSetDb(void) const

ids in taxonomic or culture dbases Check if a value has been assigned to Db data member.

vector< CRef< CDbtag > > TDb

const TTaxname & GetTaxname(void) const

Get the Taxname member data.

bool IsSetMod(void) const

Check if a value has been assigned to Mod data member.

bool IsSetOrgname(void) const

Check if a value has been assigned to Orgname data member.

bool IsSetTaxname(void) const

preferred formal name Check if a value has been assigned to Taxname data member.

const TOrgname & GetOrgname(void) const

Get the Orgname member data.

@ eSubtype_specimen_voucher

@ eSubtype_culture_collection

void SetData(TData &value)

Assign a value to Data data member.

const TSet & GetSet(void) const

Get the variant data.

bool IsSet(void) const

Check if variant Set is selected.

TSource & SetSource(void)

Select the variant.

#define FOR_EACH_DBXREF_ON_ORGREF(Itr, Var)

FOR_EACH_DBXREF_ON_ORGREF EDIT_EACH_DBXREF_ON_ORGREF.

#define FOR_EACH_ORGMOD_ON_BIOSOURCE(Itr, Var)

FOR_EACH_ORGMOD_ON_BIOSOURCE EDIT_EACH_ORGMOD_ON_BIOSOURCE.

#define FOR_EACH_SUBSOURCE_ON_BIOSOURCE(Itr, Var)

FOR_EACH_SUBSOURCE_ON_BIOSOURCE EDIT_EACH_SUBSOURCE_ON_BIOSOURCE.

#define FOR_EACH_SEQENTRY_ON_SEQSET(Itr, Var)

FOR_EACH_SEQENTRY_ON_SEQSET EDIT_EACH_SEQENTRY_ON_SEQSET.

#define FOR_EACH_SEQDESC_ON_SEQENTRY(Itr, Var)

FOR_EACH_SEQDESC_ON_SEQENTRY EDIT_EACH_SEQDESC_ON_SEQENTRY.

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