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NCBI C++ ToolKit: src/objmgr/annot_types_ci.cpp Source File

( loc.

() ) {

(scope, loc, *params);

const CSeq_annot_Handle & GetSeq_annot_Handle(void) const

virtual ~CAnnotTypes_CI(void)

const CAnnotObject_Ref & Get(void) const

const TAnnotNames & GetAnnotNames(void) const

bool MaxSearchSegmentsLimitIsReached(void) const

vector< SAnnotTypeSelector > TAnnotTypes

SAnnotSelector::TAnnotType TAnnotType

void x_Init(CScope &scope, const CSeq_loc &loc, const SAnnotSelector &params)

CSeq_annot_Handle GetAnnot(void) const

const TAnnotTypes & GetAnnotTypes(void) const

CRef< CAnnot_Collector > m_DataCollector

const TAnnotTypes & x_GetAnnotTypes(void) const

bool x_MaxSearchSegmentsLimitIsReached(void) const

const TAnnotNames & x_GetAnnotNames(void) const

void x_Initialize(const SAnnotSelector &selector, const CBioseq_Handle &bioseq, const CRange< TSeqPos > &range, ENa_strand strand)

void AddLocation(const CSeq_loc &loc, ETransSplicing trans_splcing=eNoTransSplicing)

CBioseq_Handle GetBioseqHandle(const CSeq_id &id)

Get bioseq handle by seq-id.

CScope & GetScope(void) const

Get scope this handle belongs to.

SAnnotSelector & ForceAnnotType(TAnnotType type)

Set annot type, include all subtypes.

SAnnotSelector & SetLimitSeqAnnot(const CSeq_annot_Handle &limit)

Limit annotations to those from the seq-annot only.

bool CheckAnnotType(TAnnotType type) const

Check annot type (ignore subtypes).

SAnnotSelector & SetResolveNone(void)

SetResolveNone() is equivalent to SetResolveMethod(eResolve_None).

SAnnotSelector & SetSortOrder(ESortOrder sort_order)

Set sort order of annotations.

SAnnotSelector & SetLimitSeqEntry(const CSeq_entry_Handle &limit)

Limit annotations to those from the seq-entry only.

@ eSortOrder_None

do not sort annotations for faster retrieval

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

ENa_strand

strand of nucleic acid

const TId & GetId(void) const

Get the Id member data.

const TWhole & GetWhole(void) const

Get the variant data.

TFrom GetFrom(void) const

Get the From member data.

bool IsSetStrand(void) const

Check if a value has been assigned to Strand data member.

TStrand GetStrand(void) const

Get the Strand member data.

TTo GetTo(void) const

Get the To member data.

bool IsWhole(void) const

Check if variant Whole is selected.

bool IsInt(void) const

Check if variant Int is selected.

const TInt & GetInt(void) const

Get the variant data.

@ e_not_set

No variant selected.

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