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NCBI C++ ToolKit: src/objmgr/annot_type_index.cpp Source File

83

type_subtypes[

type

].push_back(subtype);

92  ITERATE

( vector<Uint1>, it, type_subtypes[

type

] ) {

124  _TRACE

(

"type: "

<<feat_type

125

<<

" range: "

<<range.first<<

"-"

<<range.second);

129  for

(

size_t

ind = range.first; ind < range.second; ++ind ) {

177  r

.second =

r

.first?

r

.first + 1: 0;

DEFINE_STATIC_FAST_MUTEX(sm_TablesInitializeMutex)

static void x_InitIndexTables(void)

static CSeqFeatData::ESubtype GetSubtypeForIndex(size_t index)

pair< size_t, size_t > TIndexRange

static TIndexRange GetFeatTypeRange(CSeqFeatData::E_Choice type)

static TIndexRange GetTypeIndex(const CAnnotObject_Info &info)

static size_t GetSubtypeIndex(CSeqFeatData::ESubtype subtype)

static Uint1 sm_FeatSubtypeIndex[kFeatSubtype_size]

static SAnnotTypeSelector GetTypeSelector(size_t index)

static Uint1 sm_FeatTypeIndexRange[kFeatType_size][2]

static void Initialize(void)

static Uint1 sm_AnnotTypeIndexRange[kAnnotType_size][2]

static Uint1 sm_IndexSubtype[kAnnotIndex_size]

static TIndexRange GetIndexRange(const SAnnotTypeSelector &sel)

static TIndexRange GetAnnotTypeRange(CSeq_annot::C_Data::E_Choice type)

static atomic< bool > sm_TablesInitialized

static E_Choice GetTypeFromSubtype(ESubtype subtype)

@ eSubtype_bad

These no longer need to match the FEATDEF values in the C toolkit's objfdef.h.

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

uint8_t Uint1

1-byte (8-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

E_Choice

Choice variants.

@ e_not_set

No variant selected.

@ e_Ids

used for communication between tools

@ e_not_set

No variant selected.

@ e_Locs

used for communication between tools

Multi-threading – mutexes; rw-locks; semaphore.

double r(size_t dimension_, const Int4 *score_, const double *prob_, double theta_)

static SLJIT_INLINE sljit_ins st(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

TFeatSubtype GetFeatSubtype(void) const

TAnnotType GetAnnotType(void) const

TFeatType GetFeatType(void) const

void SetAnnotType(TAnnotType type)

void SetFeatSubtype(TFeatSubtype subtype)


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