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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/alnspan__vertmodel_8hpp_source.html below:

NCBI C++ ToolKit: include/gui/widgets/aln_table/alnspan_vertmodel.hpp Source File

1 #ifndef GUI_WIDGETS_ALN_SPAN___ALN_SPAN_VERT_MODEL__HPP 2 #define GUI_WIDGETS_ALN_SPAN___ALN_SPAN_VERT_MODEL__HPP 83

vector< CConstRef<objects::CSeq_loc> >

locs

;

124 void

SetThreshold(

int th

);

125 void

SetShowIndels(

bool

indel );

141 virtual

wxVariant

GetValueAt

(

int i

int

j )

const

;

169 void

x_AdjustColumns();

182 void

x_PopulateRowsSpliced(

TAlnSpans

& rows );

186 void

x_ConvertRowsToSpans(

TAlnSpans

& rows);

188 void

x_UpdateMetaData();

User-defined methods of the data storage class.

CRange< TSignedSeqPos > m_AlnRange

TAlnSpans m_AlnSpans

the alignments we represent

vector< string > m_ColNames

void SetMarkIndels(int flag)

CRef< CSpliced_seg > m_SplicedSeg

void AddAlignment(CSparseAln &aln_source)

vector< CRef< CSparseAln > > m_SparseAlns

bool GetShowIndels() const

vector< SSpanRow > TAlnSpans

int GetNumSequences() const

CAnchoredAln m_AnchoredAln

CRef< IAlnMultiDataSource > m_AlnSrc

Query-anchored alignment can be 2 or multi-dimentional.

CwxAbstractTableModel - simple TableModel implementation.

virtual wxVariant GetValueAt(int row, int col) const =0

virtual wxString GetColumnType(int col_idx) const

Tries to extract actual type from row 0 value if it exists.

virtual wxString GetColumnName(int col_idx) const

Returns a default name for the column using spreadsheet conventions: A, B, C, ...

virtual int GetNumColumns() const =0

Returns the number of columns in the model.

virtual int GetNumRows() const =0

Returns the number of rows in the model.

IAlnMultiDataSource - interface to a data source representing an abstract multiple alignment.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_GUIWIDGETS_ALNTABLE_EXPORT

Defines to provide correct exporting from DLLs in Windows.

<!DOCTYPE HTML >< html > n< header > n< title > PubSeq Gateway Help Page</title > n< style > n th

const CharType(& source)[N]

#define row(bind, expected)

the alignment we store with its parsed data

vector< CConstRef< objects::CSeq_loc > > locs

vector< string > str_ranges

visible values

vector< TSignedSeqRange > ranges

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