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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/alnread_8cpp_source.html below:

NCBI C++ ToolKit: src/objtools/readers/alnread.cpp Source File

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(sequenceInfo.

().empty()) {

pScanner->ProcessAlignmentFile(sequenceInfo, iStr, alignmentInfo);

(sequenceInfo.

().empty()) {

pScanner->ProcessAlignmentFile(sequenceInfo, iStr, alignmentInfo);

thread_local unique_ptr< CAlnErrorReporter > theErrorReporter

bool ReadAlignmentFile(istream &istr, bool, bool, CSequenceInfo &sequenceInfo, SAlignmentFile &alignmentInfo, ILineErrorListener *pErrorListener)

CAlnScanner * GetScannerForFormat(EAlignFormat format)

EAlignFormat GetFormat(CPeekAheadStream &iStr)

const string & Alphabet() const

The NCBI C++ standard methods for dealing with std::string.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

The blob sat and sat key Both must be positive integers</td > n< td > Non empty string The interpretation of the blob id depends on a processor Cassandra n processor expects the following format

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