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1 #ifndef OBJECTS_ALNMGR___ALNPOS_CI__HPP 2 #define OBJECTS_ALNMGR___ALNPOS_CI__HPP 53 TSeqPos

GetAlnPos (

void

)

const

;

153 if

(cached_seq_start == -2) {

157 if

(cached_seq_start == -1) {

161 return

cached_seq_start +

TSignedSeqPos GetStart(TNumrow row, TNumseg seg, int offset=0) const

bool IsPositiveStrand(TNumrow row) const

TNumrow GetAnchor(void) const

TSeqPos GetLen(TNumseg seg, int offset=0) const

CDense_seg::TNumseg TNumseg

TSignedSeqPos GetSeqPos(CAlnMap::TNumrow row) const

CAlnMap::TNumrow m_Anchor

vector< TSignedSeqPos > TSeqStartsCache

CAlnPos_CI & operator--(void)

CAlnPos_CI & operator++(void)

TSeqPos GetAlnPos(void) const

DECLARE_OPERATOR_BOOL(m_Valid)

TSeqStartsCache m_SeqStartsCache

CAlnMap::TNumseg m_AlnSeg

unsigned int TSeqPos

Type for sequence locations and lengths.

int TSignedSeqPos

Type for signed sequence position.

#define NON_CONST_ITERATE(Type, Var, Cont)

Non constant version of ITERATE macro.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_XALNMGR_EXPORT

S & operator--(CNetRef< S > &r, int)

#define row(bind, expected)

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