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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/alnmulti__ds__builder_8hpp_source.html below:

NCBI C++ ToolKit: include/gui/widgets/aln_multiple/alnmulti_ds_builder.hpp Source File

1 #ifndef GUI_WIDGETS_ALN_MULTIPLE___ALNMULTI_DS_BUILDER__HPP 2 #define GUI_WIDGETS_ALN_MULTIPLE___ALNMULTI_DS_BUILDER__HPP 75  void Init

(objects::CScope& scope,

const

objects::CSeq_align& align);

76  void Init

(objects::CScope& scope,

const

objects::CSeq_annot& annot);

77  void Init

(objects::CScope& scope,

const

objects::CBioseq_Handle& handle);

78  void Init

(objects::CScope& scope,

const

objects::CBioseq& bioseq);

79  void Init

(objects::CScope& scope,

const

objects::CSeq_entry& seq_entry);

83  void

PreCreateDataSource(

bool

sparse);

87  void

GetBioseqHandles(vector<CBioseq_Handle>& handles);

97

{ m_Listener = pListener; }

99

{

return

m_Listener; }

104  void

x_TestAlignments();

107  bool

x_IsLinear(

const

objects::CStd_seg& seg);

109  void

x_PreCreateSparseDataSource();

130  bool

m_SelectAnchor =

false

;

Container mapping seq-aligns to vectors of participating seq-ids.

CConstRef< objects::CSeq_id > m_MasterId

CDataChangeNotifier::IListener * m_Listener

Try to set anchor automatically.

bool m_CreateSparse

control alignment building

void SetSelectAnchor(bool select_anchor)

TAnchoredAlnVector m_AnchoredAlns

vector< CConstRef< objects::CSeq_align > > TAlignVector

CAlnIdMap< TAlnVector, TIdExtract > TAlnIdMap

virtual CDataChangeNotifier::IListener * GetListener()

TAlignVector m_OrigAligns

CAlnStats< TAlnIdMap > TAlnStats

CRef< objects::CScope > m_Scope

void SetSyncCreate(bool sync)

void Init(objects::CScope &scope, TAnnotVector &annots)

vector< CConstRef< objects::CSeq_annot > > TAnnotVector

virtual void SetListener(CDataChangeNotifier::IListener *pListener)

Subscribe a new listener for data source.

vector< CRef< CAnchoredAln > > TAnchoredAlnVector

CRef< TAlnStats > m_AlnStats

vector< const objects::CSeq_align * > TAlnVector

CAlnSeqIdsExtract< CAlnSeqId > TIdExtract

Default IAlnSeqId implementation based on CSeq_id_Handle.

Helper class which collects seq-align statistics: seq-ids participating in alignments and rows,...

Options for different alignment manager operations.

CDataChangeNotifier listener receiving notification about changes in data(source)

IHitMatrixDataSource::TAlignVector TAlignVector

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

#define NCBI_GUIWIDGETS_ALNMULTIPLE_EXPORT

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