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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/alndiag_8hpp_source.html below:

1 #ifndef UTIL__DIAG_RANGE_COLL__HPP 2 #define UTIL__DIAG_RANGE_COLL__HPP 53 int

second_width = 1);

81 return

p.second->GetSecondTo() < pos;

87 return

pos < p.second->GetSecondTo();

93 return

p1.second->GetSecondTo() < p2.second->GetSecondTo();

TFrom2Range::const_iterator const_iterator

class CAlignRangeCollection<TAlignRange> represent a sorted collection of TAlignRange.

TAlignRangeVector::const_iterator const_iterator

CAlignRange Represents an element of pairwise alignment of two sequences.

void x_Diff(const TAlnRng &rng, TAlnRngColl &result, TAlnRngColl::const_iterator &r_it)

CAlignRange< TSeqPos > TAlnRng

void TrimFirstTo(TAlnRng &rng, int trim)

CAlignRangeCollExtender< TAlnRngColl > TAlnRngCollExt

void TrimSecondTo(TAlnRng &rng, int trim)

CDiagRangeCollection(int first_width=1, int second_width=1)

Constructor.

void TrimSecondFrom(TAlnRng &rng, int trim)

void TrimFirstFrom(TAlnRng &rng, int trim)

Trimming methods.

CAlignRangeCollection< TAlnRng > TAlnRngColl

void x_DiffSecond(const TAlnRng &rng, TAlnRngColl &result, TAlnRngCollExt::const_iterator &r_it)

void Diff(const TAlnRngColl &substrahend, TAlnRngColl &difference)

Calculate a difference.

TAlnRngCollExt m_Extender

container_type::value_type value_type

TThisType & SetLength(position_type len)

TThisType & SetSecondFrom(position_type second_from)

position_type GetSecondFrom(void) const

TThisType & SetFirstFrom(position_type from)

position_type GetFirstFrom(void) const

position_type GetLength(void) const

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

TAlnRng::position_type position_type

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