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NCBI C++ ToolKit: include/objtools/alnmgr/aln_tests.hpp Source File

<

_TAlnVec,

TAlnSeqIdExtract>

TAlnSeqIdExtract::TIdVec

;

expected_number_of_alns = 0)

.reserve(expected_number_of_alns);

);

);

CAlnIdMap< vector< const CSeq_align * >, TIdExtract > TAlnIdMap

Default implementations of CAlnIdMap.

CAlnIdMap< vector< const CSeq_align * >, TScopeIdExtract > TScopeAlnIdMap

Container mapping seq-aligns to vectors of participating seq-ids.

TAlnSeqIdExtract::TIdVec TIdVec

Container (vector) of seq-ids.

const TIdVec & operator[](const CSeq_align &aln) const

Accessing the seq-ids of a particular seq-align.

CAlnIdMap(const TAlnSeqIdExtract &extract, size_t expected_number_of_alns=0)

Constructor.

const TAlnSeqIdExtract & m_Extract

size_type size(void) const

Size (number of alignments)

const TIdVec & operator[](size_t aln_idx) const

Accessing the seq-ids of a particular seq-align.

void push_back(const CSeq_align &aln)

Adding an alignment.

map< const CSeq_align *, size_t > TAlnMap

vector< TIdVec > TAlnIdVec

_TAlnVec TAlnVec

Container (vector) of seq-aligns.

const TAlnVec & GetAlnVec(void) const

Accessing the vector of alignments.

void Validate(bool full_test=false) const

container_type::const_iterator const_iterator

const_iterator end() const

iterator_bool insert(const value_type &val)

const_iterator find(const key_type &key) const

Include a standard set of the NCBI C++ Toolkit most basic headers.

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

#define NCBI_EXCEPTION_THROW(exception_var)

Throw an existing exception object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

constexpr bool empty(list< Ts... >) noexcept

Portable reference counted smart and weak pointers using CWeakRef, CRef, CObject and CObjectEx.

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