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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/aln__test__app_8cpp.html below:

NCBI C++ ToolKit: src/objtools/alnmgr/demo/aln_test_app.cpp File Reference

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◆ TAlnVector ◆ TDim ◆ TSeqIdPtr ◆ TSeqIdVector ◆ ArgToSeq_id() ◆ DumpAnchoredAln() ◆ DumpPairwiseAln()

Definition at line 175 of file aln_test_app.cpp.

References CPairwise_CI::eGap, CAlignRangeCollectionList< TAlnRange >::GetFirstFrom(), CAlignRange< Position >::GetFirstFrom(), CPairwiseAln::GetFirstId(), CAlignRangeCollectionList< TAlnRange >::GetFirstRange(), CAlignRangeCollectionList< TAlnRange >::GetFlags(), COpenRange< Position >::GetFrom(), CAlignRangeCollectionList< TAlnRange >::GetInsertions(), CPairwiseAln::GetSecondId(), CAlignRangeCollectionList< TAlnRange >::GetSecondPosByFirstPos(), COpenRange< Position >::GetToOpen(), CAlignRange< Position >::IsDirect(), CAlignRange< Position >::IsFirstDirect(), ITERATE, and COpenRange< Position >::SetToOpen().

Referenced by DumpAnchoredAln(), and CAlnTestApp::Run().

◆ DumpSparseAln()

Definition at line 227 of file aln_test_app.cpp.

References CSparseAln::AlnRangeToNativeFrames(), CSparseAln::AlnRangeToNativeSeqRange(), IAlnSegmentIterator::eAllSegments, COpenRange< Position >::Empty(), IAlnSegment::fGap, IAlnSegment::fIndel, IAlnSegment::fUnaligned, CSparseAln::GetAlnRange(), IAlnSegment::GetAlnRange(), CSparseAln::GetAlnSeqString(), CSparseAln::GetAnchor(), CSparseAln::GetBaseWidth(), CSparseAln::GetDim(), CRange_Base::GetFrom(), CSparseAln::GetNumRows(), IAlnSegment::GetRange(), CSparseAln::GetSeqAlnRange(), CSparseAln::GetSeqAlnStart(), CSparseAln::GetSeqAlnStop(), CSparseAln::GetSeqId(), CSparseAln::GetSeqRange(), CSparseAln::GetSeqString(), CRange_Base::GetTo(), IAlnSegment::GetType(), row, s_PrintSeq, and string.

Referenced by CAlnTestApp::Run().

◆ main() ◆ TestIterators() ◆ TestSparseIt() ◆ TestSparseIterator() ◆ s_PrintSeq

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