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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/aln__seqid_8cpp_source.html below:

NCBI C++ ToolKit: src/objtools/alnmgr/aln_seqid.cpp Source File

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CSeq_id_Handle::operator< (dynamic_cast<const CSeq_id_Handle&>(

));

USING_SCOPE(ncbi::objects)

virtual bool operator!=(const IAlnSeqId &id) const

CBioseq_Handle m_BioseqHandle

virtual int GetBaseWidth(void) const

Base Width - 1 = nucleotide, 3 = protein.

virtual string AsString(void) const

Sequence label - same as CSeq_id_Handle::AsString()

virtual void SetBaseWidth(int base_width)

Set base width for the sequence.

virtual TMol GetSequenceType(void) const

Check sequence type.

CConstRef< CSeq_id > m_Seq_id

virtual bool operator==(const IAlnSeqId &id) const

Comparison operators.

virtual bool operator<(const IAlnSeqId &id) const

virtual void SetBioseqHandle(const CBioseq_Handle &handle)

Store bioseq handle for the id.

virtual const CSeq_id & GetSeqId(void) const

Get CSeq_id.

Wrapper interface for seq-ids used in alignments.

bool IsNucleotide(void) const

virtual TMol GetSequenceType(void) const =0

Check sequence type.

bool IsProtein(void) const

bool operator!=(const CSeq_id_Handle &handle) const

CSeq_id::EAccessionInfo IdentifyAccession(void) const

bool operator==(const CSeq_id_Handle &handle) const

string AsString(void) const

TMol GetSequenceType(void) const

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

EMol

molecule class in living organism

@ eMol_not_set

> cdna = rna

@ eMol_na

just a nucleic acid

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