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NCBI C++ ToolKit: include/objtools/align_format/aln_printer.hpp Source File

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ePhylip = ePhylipInterleaved

(

gap) {m_AlnVec->SetGapChar(gap);}

Printer for popular multiple alignmnet formats.

EAlignType

Alignment display type for showing nucleotice or protein-related information.

int m_Width

Selected width of the text field.

CRef< CAlnVec > m_AlnVec

Alignment manager.

EFormat m_Format

Selected alignment format.

CMultiAlnPrinter & operator=(const CMultiAlnPrinter &p)

Forbid assignment operator.

void SetEndGapChar(unsigned char gap)

Set end gap character.

EFormat

Multiple alignmnet text formats.

void SetFormat(EFormat format)

Set format for printing alignment.

void SetGapChar(unsigned char gap)

Set gap character.

EAlignType m_AlignType

Alignment type.

CMultiAlnPrinter(const CMultiAlnPrinter &p)

Forbid copy constructor.

void SetWidth(int width)

Set text width (number of columns) for alignment output.

void Print(const CCompactSAMApplication::AlignInfo &ai)

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

IO_PREFIX::ostream CNcbiOstream

Portable alias for ostream.

#define NCBI_ALIGN_FORMAT_EXPORT

The blob sat and sat key Both must be positive integers</td > n< td > Non empty string The interpretation of the blob id depends on a processor Cassandra n processor expects the following format

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