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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/alignment__sorter_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/widgets/seq_graphic/alignment_sorter.cpp Source File

55  if

(iter != sm_GroupNameStrs.end()) {

64

vector<string> tokens;

66  size_t

num_tokens = tokens.size();

69  for

(

size_t i

= 0;

i

< num_tokens; ++

i

) {

94  if

(align.CheckNumRows() == 2) {

97  if

(strand1 != strand2) {

121  static const string

kSorterName =

"strand"

;

129  "Sort alignments by strand"

);

CStaticArrayMap< CAlignStrandSorter::EGroup, string > TGroupNameMap

SStaticPair< CAlignStrandSorter::EGroup, const char * > TGroupNameStr

#include <objects/seqloc/Na_strand.hpp>

static const TGroupNameStr s_GroupNameStrs[]

static const string & s_GroupIdxToName(int idx)

DEFINE_STATIC_ARRAY_MAP(TGroupNameMap, sm_GroupNameStrs, s_GroupNameStrs)

static SSorterDescriptor GetSorterDescr()

static const string & GetID()

set< EGroup > m_SortGroups

Curently intended sorting groups.

@ eInvalid

maybe it is valid, but not considered

virtual int GetGroupIdx(const objects::CSeq_align &align) const

Get the sorted group index for a given feature.

CAlignStrandSorter(const string &sort_str)

virtual string GroupIdxToName(int idx) const

Convert group index into group name.

virtual SSorterDescriptor GetThisDescr() const

Return a name for the sorter.

class CStaticArrayMap<> provides access to a static array in much the same way as CStaticArraySet<>,...

TBase::const_iterator const_iterator

iterator_bool insert(const value_type &val)

static void TokenizeWithEscape(const string &str, const string &delim, vector< string > &tokens, bool remove_escape=false)

Tokenize a string using the delim.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static bool EqualNocase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-insensitive equality of a substring with another string.

static string TruncateSpaces(const string &str, ETrunc where=eTrunc_Both)

Truncate whitespace in a string.

ENa_strand

strand of nucleic acid

Template structure SStaticPair is simlified replacement of STL pair<> Main reason of introducing this...

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