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NCBI C++ ToolKit: src/app/cn3d/alignment_set.hpp Source File

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std::list< ncbi::CRef< ncbi::objects::CSeq_annot > >

;

ncbi::objects::CSeq_align& seqAlign);

AlignmentSet(SequenceSet *seqSet, const SeqAnnotList &seqAnnots, bool ignoreBadPairwiseAlignments=false)

bool Draw(const AtomSet *atomSet=NULL) const

std::list< const MasterDependentAlignment * > AlignmentList

SeqAnnotList * newAsnAlignmentData

vector< const MasterSlaveAlignment * > AlignmentList

std::list< ncbi::CRef< ncbi::objects::CSeq_annot > > SeqAnnotList

static AlignmentSet * CreateFromMultiple(const BlockMultipleAlignment *multiple, SeqAnnotList *newAsnAlignmentData, const SequenceSet &sequenceSet, const std::vector< unsigned int > *rowOrder=NULL)

MasterDependentAlignment(StructureBase *parent, const Sequence *masterSequence, const ncbi::objects::CSeq_align &seqAlign)

ResidueVector masterToDependent

std::vector< int > ResidueVector

const Sequence * dependent

ResidueVector blockStructure

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_SCOPE(ns)

Define a new scope.

The NCBI C++/STL use hints.

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