Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/alignment__manager_8hpp_source.html below:

NCBI C++ ToolKit: src/app/cn3d/alignment_manager.hpp Source File

std::vector < unsigned int >& rowOrder);

std::map < BlockMultipleAlignment *, bool >

;

(

)

;

User-defined methods of the data storage class.

void NewAlignments(const SequenceSet *sSet, const AlignmentSet *aSet)

const SequenceSet * sequenceSet

void BlockAlignUpdate(BlockMultipleAlignment *single)

void ShowSequenceViewer(bool showNow) const

void ExtendAllUpdates(void)

bool IsInAlignment(const Sequence *sequence) const

void RealignAllDependentStructures(bool highlightedOnly) const

AlignmentManager(const SequenceSet *sSet, const AlignmentSet *aSet)

void CalculateRowScoresWithThreader(double weightPSSM)

std::vector< unsigned int > originalRowOrder

void PurgeSequence(const MoleculeIdentifier *identifier)

UpdateViewer * updateViewer

void RealignDependentSequences(BlockMultipleAlignment *multiple, const std::vector< unsigned int > &dependentsToRealign)

BlockMultipleAlignment * CreateMultipleFromPairwiseWithIBM(const PairwiseAlignmentList &alignments)

void BlockAlignAllUpdates(void)

void ExtendUpdate(BlockMultipleAlignment *single)

const Vector * GetAlignmentColor(const Sequence *sequence, unsigned int seqIndex, StyleSettings::eColorScheme colorScheme) const

void ShowHideCallbackFunction(const std::vector< bool > &itemsEnabled)

void ShowUpdateWindow(void) const

virtual ~AlignmentManager(void)

void GetUpdateSequences(std::list< const Sequence * > *updateSequences) const

std::map< BlockMultipleAlignment *, bool > UpdateMap

void GetAlignmentSetDependentVisibilities(std::vector< bool > *visibilities) const

std::list< ncbi::CRef< ncbi::objects::CUpdate_align > > UpdateAlignList

SequenceViewer * sequenceViewer

bool GetStructureProteins(std::vector< const Sequence * > *chains) const

BlockMultipleAlignment * originalMultiple

unsigned int NUpdates(void) const

void ThreadUpdate(const ThreaderOptions &options, BlockMultipleAlignment *single)

void SavePairwiseFromMultiple(const BlockMultipleAlignment *multiple, const std::vector< unsigned int > &rowOrder)

const BlockMultipleAlignment * GetCurrentMultipleAlignment(void) const

std::vector< bool > dependentsVisible

BlockAligner * blockAligner

void ReplaceUpdatesInASN(ncbi::objects::CCdd::TPending &newUpdates) const

bool IsAligned(const Sequence *sequence, unsigned int seqIndex) const

void NewMultipleWithRows(const std::vector< bool > &visibilities)

void MergeUpdates(const UpdateMap &updates, bool mergeToNeighbor)

const AlignmentSet * alignmentSet

std::list< const MasterDependentAlignment * > PairwiseAlignmentList

void GetAlignmentSetDependentSequences(std::vector< const Sequence * > *sequences) const

void ThreadAllUpdates(const ThreaderOptions &options)

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_SCOPE(ns)

Define a new scope.

The NCBI C++/STL use hints.

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4