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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/alignment__conf_8hpp_source.html below:

NCBI C++ ToolKit: include/gui/widgets/seq_graphic/alignment_conf.hpp Source File

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1 #ifndef GUI_OBJUTILS___ALIGNMENT_CONF__HPP 2 #define GUI_OBJUTILS___ALIGNMENT_CONF__HPP 65

eHide_Duplicates = 0x1,

77

: m_LabelPos(ePos_Side)

78

, m_UnalignedTailsMode(eTails_ShowGlyph)

81

, m_ShowIdenticalBases(

true

)

82

, m_ShowUnalignedTailsForTrans2GenomicAln(

true

)

83

, m_CompactMode(eNormal)

137

: m_ShowLabel(

true

)

ELabelPosition m_LabelPos

@ eNormal

no compact mode

CRgbaColor m_SmearColorMin

CRgbaColor m_SmearColorMax

CGlTextureFont m_LabelFont

bool m_Dirty

Dirty flag indicates any unsaved changes.

ECompactMode m_CompactMode

Alignment layout compact mode.

CRgbaColor m_UnalignedSequence

bool m_ShowIdenticalBases

bool m_ShowUnalignedTailsForTrans2GenomicAln

CRgbaColor m_NonConsensus

EUnalignedTailsMode m_UnalignedTailsMode

@ ePos_Above

above the rendered bar

@ ePos_Side

always on 5' side

CMatePairConfig: the data structure holding alignment rendering parameters.

CRgbaColor m_FGOrientation

bool m_Dirty

Dirty flag indicates any unsaved changes.

CRgbaColor m_FGContraAlign

CRgbaColor m_SeqNonUnique

CGlTextureFont m_LabelFont

CRgbaColor m_SeqOrientation

CRgbaColor m_SeqMismatchNo

CRgbaColor m_SeqMismatchNonUnique

CRgbaColor m_SeqMismatchDistance

CRgbaColor m_SeqMismatchOrientation

class CRgbaColor provides a simple abstraction for managing colors.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_GUIWIDGETS_SEQGRAPHIC_EXPORT

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