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USING_SCOPE (sequence) string GetTargetAcc (int shift, const deque< char > &id_pool) bool OriginalOrder (const SAlignIndividual &a, const SAlignIndividual &b) bool AlignmentMarkedForDeletion (const SAlignIndividual &ali) bool AlignmentIsSupportedBySR (const CAlignModel &align, const vector< double > &coverage, int mincoverage, int left_end) bool isGoodIntron (int a, int b, EStrand strand, const CAlignCollapser::TAlignIntrons &introns, bool check_introns_on_both_strands) int TotalFrameShift (const TInDels &indels, int a, int b) int TotalFrameShift (const TInDels &indels, TSignedSeqRange range=TSignedSeqRange::GetWhole()) bool OneExonCompare (const CModelExon &a, const CModelExon &b) ◆ BIG_NOT_ALIGNED ◆ COLLAPS_CHUNK ◆ COVERAGE_WINDOW #define COVERAGE_WINDOW 20 ◆ COVERED_FRACTION ◆ CUT_MARGIN ◆ DESIRED_CHUNK #define DESIRED_CHUNK 100 ◆ END_PART_LENGTH ◆ EXON_TO_SKIP ◆ EXTRA_CUT ◆ FS_FUZZ ◆ INDEL_PENALTY ◆ MAX_CLIP ◆ MAX_DIST_TO_FLANK_GAP ◆ MIN_EXON ◆ MISM_PENALTY ◆ SMALL_CLIP ◆ AlignmentIsSupportedBySR() ◆ AlignmentMarkedForDeletion() ◆ GetTargetAcc() ◆ isGoodIntron() ◆ OneExonCompare() ◆ OriginalOrder() ◆ TotalFrameShift() [1/2] ◆ TotalFrameShift() [2/2] ◆ USING_SCOPE()RetroSearch is an open source project built by @garambo | Open a GitHub Issue
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