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NCBI C++ ToolKit: include/gui/widgets/seq_graphic/align_statistics_glyph.hpp Source File

1 #ifndef GUI_WIDGETS_SEQ_GRAPHIC___ALIGN_STATISTICS_GLYPH__HPP 2 #define GUI_WIDGETS_SEQ_GRAPHIC___ALIGN_STATISTICS_GLYPH__HPP 91

fShowMismatch = 1 << 2,

93

fDefault = fBarGraph | fShowCount | fShowMismatch | fShowTotal

157  bool

IsBarGraph()

const

;

158  bool

ShowCount()

const

;

159  bool

ShowAGTC()

const

;

160  bool

ShowTotal()

const

;

161  bool

ShowLabel()

const

;

162  void

SetShowLabel(

bool

flag);

164  void

SetDisplayFlag(FDisplay bit,

bool f

);

169  bool

m_HasAmbigBases =

false

;

195  virtual bool

OnLeftDblClick(

const TModelPoint

& p);

198  virtual void

GetHTMLActiveAreas(

TAreaVector

* p_areas)

const

;

199  virtual bool

IsClickable()

const

;

203  const TStatVec

& GetStatVec()

const

;

206  void

SetCgiMode(

bool

cgi_mode =

true

);

214  virtual void

x_Draw()

const

;

215  virtual void

x_UpdateBoundingBox();

218  void

x_DrawBarGraph()

const

;

219  void

x_DrawDensityTable()

const

;

220  int

x_GetMaxTotal()

const

;

221

vector<int> x_GetShowList()

const

;

233  bool

m_CgiMode =

false

;

234  bool

m_ShowIntrons =

false

;

static string GetStatLabel(int stat)

@ fBarGraph

otherwise, shown as density table

@ fShowCount

otherwise, shown percentage

@ fShowMismatch

otherwise, shown individual count

void SetDisplayFlag(FDisplay bit, bool f)

int m_StatZoomLevel

at what zoom level to turn on statistics

static int GetRefSeqIdex(char base)

void SetShowLabel(bool flag)

array< CRgbaColor, eStat_Total+1 > m_Colors

color settings

EStatType

statistics enum.

@ eStat_Intron

intron (for mRNA-to-genome alignments)

@ eStat_Ambig

ambiguous consensus (for MSA pileup)

@ eStat_Mismatch

mismatches (A+G+T+C - matches)

@ eStat_Total

total alignment count at this base (A+G+T+C+Gap)

bool IsBarGraph() const

CAlnStatConfig inline method implementation.

const TStatVec & GetStatVec() const

void SetCgiMode(bool cgi_mode=true)

void SetConfig(CRef< CAlnStatConfig > conf, CRef< CHistParams > params)

CAlnStatGlyph inline method implementation.

TModelUnit m_ZoomScale

zoom scale when this statistics are computed.

void SetDialogHost(IGlyphDialogHost *host)

vector< SStatStruct > TStatVec

CRef< CAlnStatConfig > m_Config

void ShowIntrons(bool show=true)

CRef< CHistParams > m_GraphParams

IGlyphDialogHost * m_DlgHost

class CRgbaColor provides a simple abstraction for managing colors.

class CSeqGlyph defines an interface that wraps a rectilinear abstract object.

vector< CHTMLActiveArea > TAreaVector

IGlyphDialogHost An interface used for handling issues related to any dialog pops up that requires so...

unsigned int TSeqPos

Type for sequence locations and lengths.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_GUIWIDGETS_SEQGRAPHIC_EXPORT

static const char label[]

Portable reference counted smart and weak pointers using CWeakRef, CRef, CObject and CObjectEx.

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