Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/align__statistics__glyph_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/widgets/seq_graphic/align_statistics_glyph.cpp Source File

=

;

(dlg.ShowModal() == wxID_OK) {

(idx >= 0 && idx < (

)

.size()) {

sprintf(

,

, 100.0 * num / total);

sprintf(

,

, 100.0 * num / total);

sprintf(

,

, 100.0 * num / total);

sprintf(

,

, 100.0 * num / total);

sprintf(

,

, 100.0 * num / total);

sprintf(

,

, 100.0 * num / total);

sprintf(

,

, 100.0 * num / total);

sprintf(

,

, 100.0 * num / total);

tt.

(

);

->SetName(

);

->SetShown(

);

p_areas->push_back(area);

right = view_width;

p_areas->emplace_back(label_area);

vector<int>::reverse_iterator iter = rows.rbegin();

(; iter != rows.rend(); ++iter) {

area.

+=

;

p_areas->push_back(area);

max_value = max_t;

(total == 0)

;

total_factor = 1.0;

log_total = 1.;

total_factor /= total;

total_factor /= total;

total_factor *= log_total;

curr_total= 0;

(vector<int>, v_iter, show_list) {

= iter->m_Data[*v_iter];

(

== 0)

;

(curr_total +

> total)

= total - curr_total;

(curr_total >= total)

tick_dist = 30.0;

tick_n = (

)(floor(bar_h / tick_dist));

tick_dist = bar_h / tick_n;

(max_t == 0)

;

(

= 0;

< tick_n; ++

) {

->

(left, bottom - tick_dist * (

+ 1), right, bottom - tick_dist * (

+ 1));

(dist_x < min_dist) {

(; x < right; x += dist_x) {

& vr = pane->GetVisibleRect();

x = vr.

() - ((w + 16) * one_px);

y = vr.

() + h + 2;

gl.

(0.6f, 0.6f, 0.8f, 0.5f);

(max_t == 0)

;

(total == 0)

;

total_factor = 1.0;

total_factor /= total;

(vector<int>, v_iter, show_list) {

(iter->m_Data[*v_iter] == 0)

;

c_factor *= total_factor * d_factor;

( !show_count ) num *= 100;

}

(num < 1.0) {

vector<string> labels;

(vector<int>, v_iter, show_list) {

labels.push_back(

);

gl.

(0.8f, 1.0f, 0.8f, 1.0f);

gl.

(0.0f, 0.0f, 0.0f);

(vector<string>, l_iter, labels) {

&

= *l_iter;

vector<int> show_list;

);

,

,

,

,

,

,

,

,

,

,

,

,

,

,

,

,

static const string kScale

static const string kPileUpLabel

static const string kPileUpColor

static void s_GetLabel(CHistParams::EScale scale, string &label)

static int kSmearRowHeight

static double s_log_value(double value, CHistParams::EScale scale)

static string GetStatLabel(int stat)

@ fBarGraph

otherwise, shown as density table

@ fShowCount

otherwise, shown percentage

@ fShowMismatch

otherwise, shown individual count

void SetDisplayFlag(FDisplay bit, bool f)

int m_StatZoomLevel

at what zoom level to turn on statistics

array< CRgbaColor, eStat_Total+1 > m_Colors

color settings

@ eStat_Intron

intron (for mRNA-to-genome alignments)

@ eStat_Ambig

ambiguous consensus (for MSA pileup)

@ eStat_Mismatch

mismatches (A+G+T+C - matches)

@ eStat_Total

total alignment count at this base (A+G+T+C+Gap)

bool IsBarGraph() const

CAlnStatConfig inline method implementation.

virtual bool OnLeftDblClick(const TModelPoint &p)

virtual void GetTooltip(const TModelPoint &p, ITooltipFormatter &tt, string &t_title) const

Get the tooltip if available.

virtual void x_Draw() const

The default renderer for this layout object.

virtual void x_UpdateBoundingBox()

Update the bounding box assuming children's sizes are fixed if any.

virtual void GetHTMLActiveAreas(TAreaVector *p_areas) const

Get html active areas.

virtual bool NeedTooltip(const TModelPoint &p, ITooltipFormatter &tt, string &t_title) const

Check if need to show tooltip.

int x_GetMaxTotal() const

TModelUnit m_ZoomScale

zoom scale when this statistics are computed.

void x_DrawDensityTable() const

CAlnStatGlyph(TSeqPos start, TModelUnit sacle)

CAlnStatGlyph.

vector< SStatStruct > TStatVec

CRef< CAlnStatConfig > m_Config

void x_DrawBarGraph() const

virtual bool IsClickable() const

Query if this glyph is clickable.

vector< int > x_GetShowList() const

CRef< CHistParams > m_GraphParams

IGlyphDialogHost * m_DlgHost

static CRef< objects::CChoice > CreateDisplayOptions(const string &option_name, int display_flag)

CGlAttrGuard - guard class for restoring OpenGL attributes.

string m_Descr

description that can be used as label or tooltip

@ fNoTooltip

do not request and show tooltip

@ fZoomOnDblClick

Zoom on Double click.

@ fNoPin

tooltip is not pinnable

@ fNoHighlight

no highlighting on mouse over

@ fDrawBackground

highlight background for this area

@ fComment

render a label/comment on client side

@ fNoSelection

the object can't be selected

string m_Color

optional area color (used for legen items)

string m_ID

area identifier

int m_Flags

area flags, will need to replace m_Type

CRef< objects::CTrackConfig > m_Config

Area specific configuration settings.

bool m_PositiveStrand

the default is true

static CRef< objects::CChoice > CreateScaleOptions(const string &option_name, CHistParams::EScale option_value)

EScale m_Scale

requested scale

static const string & ScaleValueToName(CHistParams::EScale scale)

void TextOut(const CGlTextureFont *font, const char *text, TModelUnit x, TModelUnit y, bool center, bool adjust_flip=true) const

TModelUnit GetVisibleFrom() const

CGlPane * GetGlPane()

inline method implementations

const TModelRange & GetVisibleRange() const

TModelRange IntersectVisible(const CSeqGlyph *obj) const

void DrawLine(TModelUnit x1, TModelUnit y1, TModelUnit x2, TModelUnit y2) const

void DrawQuad(const TModelRect &rc, bool border=false) const

const TModelUnit & GetScale() const

TModelUnit SeqToScreen(const TModelUnit &size) const

convert from sequence positions to screen pixels

TModelUnit ScreenToSeq(const TModelUnit &size) const

convert from screen pixels to sequence positions

TSeqPos GetViewWidth() const

class CRgbaColor provides a simple abstraction for managing colors.

void x_InitHTMLActiveArea(CHTMLActiveArea &area) const

initialize the basic information for a given active area.

CRenderingContext * m_Context

the rendering context

virtual void x_OnLayoutChanged()

update the layout.

virtual void SetHeight(TModelUnit h)

virtual TModelUnit GetRight() const

virtual void SetWidth(TModelUnit w)

virtual void SetLeft(TModelUnit l)

virtual TModelUnit GetTop() const

void x_Local2World(TModelPoint &p) const

Transform the coordiantes from local coord. to world coord.

virtual TModelUnit GetWidth() const

virtual TModelUnit GetLeft() const

vector< CHTMLActiveArea > TAreaVector

virtual TModelUnit GetBottom() const

static CRef< objects::CChoice > CreateChoice(const string &name, const string &disp_name, const string &curr_val, const string &help, bool optional=false)

static CRef< objects::CChoiceItem > CreateChoiceItem(const string &name, const string &disp_name, const string &help, const string &legend_txt, bool optional=false)

void SetDisplay(bool is_graph)

void SetContent(bool is_agtc)

void SetValueType(bool is_count)

void SetGraphHeight(int h)

int GetGraphHeight() const

virtual void PostDialogShow()=0

Post-processing after showing a dialog.

virtual void PreDialogShow()=0

Prepare for showing a dialog.

unsigned int TSeqPos

Type for sequence locations and lengths.

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

void Color3f(GLfloat r, GLfloat g, GLfloat b)

IRender & GetGl()

convenience function for getting current render manager

virtual TModelUnit TextHeight(const CGlTextureFont *font) const =0

virtual TModelUnit TextWidth(const CGlTextureFont *font, const char *text) const =0

void Color4f(GLfloat r, GLfloat g, GLfloat b, GLfloat a)

virtual void Disable(GLenum glstate)=0

glDisable()

virtual void LineWidth(GLfloat w)=0

Set line width for drawing: glLineWidth()

virtual void ColorC(const CRgbaColor &c)=0

Set current color (glColor{3,4}{f,d}{v,})

@ eFontFace_Helvetica_Bold

virtual void AddRow(const string &sContents="", unsigned colspan=2)=0

add a row with a cell, spanning across all columns

static CRgbaColor Interpolate(const CRgbaColor &color1, const CRgbaColor &color2, float alpha)

Interpolate two colors.

virtual void AddSectionRow(const string &sContents)=0

add a section row

uint64_t Uint8

8-byte (64-bit) unsigned integer

position_type GetLength(void) const

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static string Int8ToString(Int8 value, TNumToStringFlags flags=0, int base=10)

Convert Int8 to string.

static string IntToString(int value, TNumToStringFlags flags=0, int base=10)

Convert int to string.

static string UIntToString(unsigned int value, TNumToStringFlags flags=0, int base=10)

Convert UInt to string.

static enable_if< is_arithmetic< TNumeric >::value||is_convertible< TNumeric, Int8 >::value, string >::type NumericToString(TNumeric value, TNumToStringFlags flags=0, int base=10)

Convert numeric value to string.

@ fWithCommas

Use commas as thousands separator.

static const char label[]

void SetFrom(TFrom value)

Assign a value to From data member.

void SetTo(TTo value)

Assign a value to To data member.

unsigned int

A callback function used to compare two keys in a database.

const GenericPointer< typename T::ValueType > T2 value

#define row(bind, expected)

int m_Data[CAlnStatConfig::eStat_Total+1]

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4