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NCBI C++ ToolKit: src/gui/widgets/aln_multiple/align_mark_handler.cpp Source File

m_bHitResizable(

),

m_CursorId(wxCURSOR_DEFAULT),

m_FillColor(0.5

, 0.5

, 1.0

, 0.5

),

m_FrameColor(0.25

, 0.25

, 0.5

, 1.0

),

m_DragArea = wxSystemSettings::GetMetric(wxSYS_DRAG_X);

wxGetKeyState(wxKeyCode(

));

wxPoint ms_pos =

.GetPosition();

(event.Dragging()) {

wxPoint ms_pos =

.GetPosition();

k =

.GetKeyCode();

(k == WXK_DELETE) {

hit_start =

;

seq_start = (hit_start ==

);

start_pos = (

) floor(mX);

hit_start =

;

bMinStart =

;

=

(X - FromX);

(MinD < 0 || MinD >

) {

hit_start = bMinStart;

(pos >

.GetFrom()) {

.SetToOpen(

.GetFrom());

(pos >

.GetFrom()) {

.SetToOpen(

.GetFrom());

(pos <=

.GetToOpen()) {

.SetFrom(

.GetToOpen());

(

.m_StartState) {

(

.GetTo() > hit_r.

()) {

(

.GetFrom() < hit_r.

()) {

(

.GetFrom() < hit_r.

()) {

(

.GetTo() > hit_r.

()) {

(! rcV.

() && pAlnDS && pModel) {

bVisible = ! (bottom_y < rcV.

() || top_y > rcV.

());

gl.

(x1, bottom_y - offset_y, x2, top_y - offset_y);

gl.

(x1, bottom_y - offset_y, x2, top_y - offset_y);

gl.

(0.25, 0.25, 1.0, 1.0);

gl.

(x1, bottom_y - offset_y,

x2, top_y - offset_y);

(seq_r.

()) {

CAlignMarkHandler manages handling and editing of marks on alignments.

void SetHost(IAlignMarkHandlerHost *pHost)

wxStockCursor m_CursorId

operation type

void OnMouseCaptureLost(wxMouseCaptureLostEvent &evt)

void MarkRow(TNumrow row, const TRangeColl &C, bool set)

mark/unmark a collection of intervals in alignment coordinates

void OnLeftUp(wxMouseEvent &event)

IAlnExplorer::TNumrow TNumrow

TSeqPos x_ClipPosByRange(TSeqPos Pos)

void OnMotion(wxMouseEvent &event)

IAlignMarkHandlerHost::TRangeColl TRangeColl

void OnKeyUp(wxKeyEvent &event)

TRowToDeltaMap m_mpRowToDelta

Marks.

const IAlignMarkHandlerHost * x_GetHost() const

void x_OnSelectCursor(const wxPoint &ms_pos)

void MarkSelectedRows(const TRangeColl &C, bool set)

IAlignMarkHandlerHost * m_Host

Ranges being edited.

void x_OnChangeSelRange(const wxPoint &ms_pos)

void x_UpdateMarks()

applies changes in SMarkDelta to mark collection

TRowToMarkMap m_mpRowToMark

bool x_HitRangeBorder(const wxPoint &ms_pos) const

void Render(CGlPane &Pane)

IGenericHandlerHost * GetGenericHost()

virtual wxEvtHandler * GetEvtHandler()

void OnKeyDown(wxKeyEvent &event)

void x_UpdateSelection(TSeqPos NewPos)

void x_HitTest(TNumrow Row, const TRangeColl &C, int X, TSeqRange &Range, bool &bHitStart) const

void OnLeftDown(wxMouseEvent &event)

void x_OnEndSelRange(EState new_state, const wxPoint &ms_pos)

void x_InitDeltaMap(const wxPoint &ms_pos)

void x_UpdateDelta(TSeqRange &R, SMarkDelta::EExtState &State, TSeqPos Pos)

void MarkRowSeq(TNumrow row, const TRangeColl &C, bool set)

mark/unmark a collection of intervals in seq. coordinates

const TRowToMarkMap & GetMarks() const

bool x_HitSelectedLine(const wxPoint &ms_pos)

void x_OnStartSel(const wxPoint &ms_pos)

Signal handlers.

const TRangeColl * GetMark(TNumrow row) const

virtual void SetPane(CGlPane *pane)

void x_UpdateState(bool b_key, const wxPoint &ms_pos)

TSeqRange x_AlnRangeFromSeqRange(const IAlnMultiDataSource *pAlnDS, TNumrow row, const TSeqRange &seq_r)

TModelUnit x_MouseToSeqPos(const wxPoint &ms_pos)

helper functions

TRangeVector::const_iterator const_iterator

TThisType & CombineWith(const TRange &r)

TThisType & Subtract(const TRange &r)

interface IAlignMarkHandlerHost

virtual TModelUnit MHH_GetSeqPosByX(int X) const =0

virtual int MHH_GetLinePosY(int Index) const =0

virtual int MHH_GetLineByRowNum(TNumrow Row) const =0

virtual int MHH_GetLineByWindowY(int Y) const =0

virtual int MHH_GetLineHeight(int Index) const =0

virtual const TSelListModel * MHH_GetSelListModel() const =0

virtual const IAlnMultiDataSource * MHH_GetAlnDS() const =0

virtual TNumrow MHH_GetRowByLine(int Index) const =0

ESearchDirection

Position search options.

@ eRight

Towards higher aln coord (always to the right)

@ eLeft

Towards lower aln coord (always to the left)

IAlnMultiDataSource - interface to a data source representing an abstract multiple alignment.

virtual TSignedSeqPos GetSeqPosFromAlnPos(TNumrow for_row, TSeqPos aln_pos, IAlnExplorer::ESearchDirection dir=IAlnExplorer::eNone, bool try_reverse_dir=true) const =0

virtual bool IsPositiveStrand(TNumrow row) const =0

virtual TSignedSeqPos GetAlnPosFromSeqPos(TNumrow row, TSeqPos seq_pos, IAlnExplorer::ESearchDirection dir=IAlnExplorer::eNone, bool try_reverse_dir=true) const =0

virtual bool IsNegativeStrand(TNumrow row) const =0

virtual void GHH_ReleaseMouse()=0

releases captured mouse

virtual void GHH_Redraw()=0

redraws the Host and the handler

virtual void GHH_CaptureMouse()=0

captures mouse events in the hosting window for D&D

virtual void GHH_SetCursor(const wxCursor &cursor)=0

changes the cursor in the hosting window

virtual void SLM_GetSelectedIndices(TIndexVector &vIndices) const =0

virtual TItem SLM_GetItem(TIndex index) const =0

vector< TIndex > TIndexVector

virtual bool SLM_IsItemSelected(TIndex index) const =0

container_type::const_iterator const_iterator

container_type::iterator iterator

const_iterator end() const

iterator_bool insert(const value_type &val)

container_type::value_type value_type

const_iterator find(const key_type &key) const

unsigned int TSeqPos

Type for sequence locations and lengths.

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define NON_CONST_ITERATE(Type, Var, Cont)

Non constant version of ITERATE macro.

TVPUnit ProjectX(TModelUnit m_x) const

IRender & GetGl()

convenience function for getting current render manager

TModelUnit GetOffsetY() const

void Color4d(GLdouble r, GLdouble g, GLdouble b, GLdouble a)

TModelRect & GetModelLimitsRect(void)

virtual void PolygonMode(GLenum face, GLenum mode)=0

Set the polygon rasterization mode.

TModelRect & GetVisibleRect(void)

TModelUnit GetOffsetX() const

virtual void ColorC(const CRgbaColor &c)=0

Set current color (glColor{3,4}{f,d}{v,})

void Rectd(GLdouble x1, GLdouble y1, GLdouble x2, GLdouble y2)

bool NotEmpty(void) const

position_type GetToOpen(void) const

TThisType & SetLength(position_type length)

CRange< TSeqPos > TSeqRange

typedefs for sequence ranges

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

void SetFrom(TFrom value)

Assign a value to From data member.

TTo GetTo(void) const

Get the To member data.

TFrom GetFrom(void) const

Get the From member data.

Int4 delta(size_t dimension_, const Int4 *score_)

double r(size_t dimension_, const Int4 *score_, const double *prob_, double theta_)

#define row(bind, expected)

helper class representing range being edited

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