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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/align__ds_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/widgets/aln_multiple/align_ds.cpp Source File

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70  switch

(GetErrCode()) {

100  for

( ; iter; ++iter) {

119  "Annotation is not an alignment"

);

146  for

( ; iter; ++iter) {

164  LOG_POST

(

Error

<<

"CAlignDataSource::x_Init(): caught exception: "

USING_SCOPE(ncbi::objects)

virtual const char * GetErrCodeString(void) const override

NCBI_EXCEPTION_DEFAULT(CAlignDataSourceException, CException)

virtual void Init(objects::CAlnVec &vec)

CRef< objects::CAlnVec > m_AlnMgr

virtual void x_Init(objects::CAlnMix &mix)

objects::CAlnVec & SetAlnMgr(void)

const objects::CAlnVec & GetAlnMgr(void) const

void Merge(TMergeFlags flags=0)

const CDense_seg & GetDenseg(void) const

CScope & GetScope(void) const

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define LOG_POST(message)

This macro is deprecated and it's strongly recomended to move in all projects (except tests) to macro...

void Error(CExceptionArgs_Base &args)

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

virtual const char * GetErrCodeString(void) const

Get error code interpreted as text.

virtual const char * what(void) const noexcept

Standard report (includes full backlog).

#define EXCEPTION_VIRTUAL_BASE

Do not use virtual base classes in exception declaration at all, because in this case derived class s...

static objects::SAnnotSelector GetAnnotSelector(TAnnotFlags flags=0)

request an annotation selector for a given type

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

bool IsAlign(void) const

Check if variant Align is selected.

list< CRef< CSeq_align > > TAlign

const TAlign & GetAlign(void) const

Get the variant data.

const TData & GetData(void) const

Get the Data member data.


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