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NCBI C++ ToolKit: src/objmgr/align_ci.cpp Source File

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!= &iter ) {

CAnnotTypes_CI::operator=(iter);

const CSeq_align & GetMappedSeq_align(const CSeq_align &orig) const

bool IsMapped(void) const

const CSeq_align & GetAlign(void) const

CAnnotMapping_Info & GetMappingInfo(void) const

const CAnnotObject_Ref & Get(void) const

const TIterator & GetIterator(void) const

CSeq_annot_Handle GetAnnot(void) const

unsigned int TSeqPos

Type for sequence locations and lengths.

CAlign_CI & operator=(const CAlign_CI &iter)

const CSeq_align & GetOriginalSeq_align(void) const

Get original alignment.

CAlign_CI & operator--(void)

Move to the pervious object in iterated sequence.

void Rewind(void)

Move to the first object in iterated sequence.

const CSeq_align * operator->(void) const

Mapped alignment, not the original one.

CConstRef< CSeq_align > m_MappedAlign

CAlign_CI & operator++(void)

Move to the next object in iterated sequence.

CAlign_CI(void)

Create an empty iterator.

CSeq_align_Handle GetSeq_align_Handle(void) const

Get original alignment handle.

const CSeq_align & operator*(void) const

Mapped alignment, not the original one.

void Reset(void)

Reset reference object.

bool ReferencedOnlyOnce(void) const THROWS_NONE

Check if object is referenced only once.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

ENa_strand

strand of nucleic acid

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