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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/agp__object__loader_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/widgets/loaders/agp_object_loader.cpp Source File

: m_Params(params), m_FileNames(

)

;

( !fasta_file.empty() ) {

(

exception& e) {

wxString& fn = *it;

vector<CRef<CSeq_entry> >

;

(

exception& e) {

bool GetSetGapInfo() const

wxString GetFastaFile() const

virtual string GetErrorMessage(const string &filename=NcbiEmptyString)

Return a string with one (or two, depending on error) source line(s) on which the error occured,...

virtual int ReadStream(CNcbiIstream &is, EFinalize eFinalize=eFinalize_Yes)

Read an AGP file from the given input stream.

This class is used to turn an AGP file into a vector of Seq-entry's.

@ fSetSeqGap

Found gaps will not be given Seq-data such as Type and Linkage.

@ fForceLocalId

All IDs will be treated as local IDs.

TSeqEntryRefVec & GetResult(void)

This gets the results found, but don't call before finalizing.

Base class for reading FASTA sequences.

void SetCanceler(ICanceled *=nullptr)

void x_ShowErrorsDlg(const wxString &title)

void x_UpdateHTMLResults(const wxString &object, objects::ILineErrorListener *errCont, const string &exception="", const string &error_msg="", const wxString &objectName=wxT("File:"))

Interface for testing cancellation request in a long lasting operation.

vector< SObject > TObjects

Operators to edit gaps in sequences.

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define NON_CONST_ITERATE(Type, Var, Cont)

Non constant version of ITERATE macro.

const string & GetMsg(void) const

Get message string.

virtual const char * what(void) const noexcept

Standard report (includes full backlog).

virtual bool PreExecute()

CAgpObjectLoader(const CAgpLoadParams &params, const vector< wxString > &filenames)

virtual bool Execute(ICanceled &canceled)

virtual string GetDescription() const

virtual TObjects & GetObjects()

vector< wxString > m_FileNames

virtual bool PostExecute()

static void GetLabel(const CObject &obj, string *label, ELabelType type=eDefault)

CRef< CSeq_entry > ReadSet(int max_seqs=kMax_Int, ILineErrorListener *pMessageListener=nullptr)

Read multiple sequences (by default, as many as are available.)

static CRef< ILineReader > New(const string &filename)

Return a new ILineReader object corresponding to the given filename, taking "-" (but not "....

@ fParseGaps

Make a delta sequence if gaps found.

@ fDisableParseRange

No ranges in seq-ids. Ranges part of seq-id instead.

static CRef< CObjectManager > GetInstance(void)

Return the existing object manager or create one.

void AddDefaults(TPriority pri=kPriority_Default)

Add default data loaders from object manager.

TObjectType * GetPointer(void) THROWS_NONE

Get pointer,.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

virtual bool IsCanceled(void) const =0

static const char label[]

Defines classes: CDirEntry, CFile, CDir, CSymLink, CMemoryFile, CFileUtil, CFileLock,...

static wxAcceleratorEntry entries[3]

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