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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/agp__export__job_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/packages/pkg_sequence/agp_export_job.cpp Source File

:

(

), m_Params(params)

(object_id.empty()) {

object_id =

;

err_msg =

+

(fname.ToUTF8()) +

;

(err_msg.empty()) {

USING_SCOPE(ncbi::objects)

void AgpWrite(CNcbiOstream &os, const objects::CSeqMap &seq_map, const string &object_id, objects::CScope &scope, const vector< char > &component_types=vector< char >(), CAgpWriteComponentIdMapper *comp_id_mapper=nullptr, int agp_version=2)

Write a SeqMap in AGP format, using provided scope.

CAgpExportJob(const CAgpExportParams &params)

CAgpExportParams m_Params

virtual EJobState Run()

Function that does all the useful work, called by the Engine.

string GetGapType() const

wxString GetFileName() const

SConstScopedObject GetSeqLoc() const

wxString GetAltObjId() const

bool GetAssertEvidence() const

CAppJobError Default implementation for IAppJobError - encapsulates a text error message.

CAppJob - default implementation of IAppJob that could be used as a base class.

Template class for iteration on objects of class C (non-medifiable version)

#define LOG_POST(message)

This macro is deprecated and it's strongly recomended to move in all projects (except tests) to macro...

const string & GetMsg(void) const

Get message string.

void Info(CExceptionArgs_Base &args)

CRef< CAppJobError > m_Error

static void GetLabel(const CObject &obj, string *label, ELabelType type=eDefault)

CRef< objects::CScope > scope

string m_Descr

mutex to sync our internals

EJobState

Job states (describe FSM)

CConstRef< CObject > object

TRange GetTotalRange(void) const

const CSeq_id & GetId(const CSeq_loc &loc, CScope *scope)

If all CSeq_ids embedded in CSeq_loc refer to the same CBioseq, returns the first CSeq_id found,...

CBioseq_Handle GetBioseqHandle(const CSeq_id &id)

Get bioseq handle by seq-id.

TObjectType * GetPointer(void) const THROWS_NONE

Get pointer,.

void Reset(void)

Reset reference object.

TObjectType & GetObject(void)

Get object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

IO_PREFIX::ofstream CNcbiOfstream

Portable alias for ofstream.

TTo GetTo(void) const

Get the To member data.

TFrom GetFrom(void) const

Get the From member data.

string ToStdString(const wxString &s)

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