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NCBI C++ ToolKit: src/gui/packages/pkg_alignment/advanced_cleanup_tool.cpp Source File

,

,

,

),

;

;

=

;

list< CRef< CSeq_align > > input_aligns, cleaned_aligns;

input_aligns.emplace_back(

*

(seq_align));

(input_aligns.empty()) {

(

<<

);

unique_ptr<CArgs> args(arg_desc->CreateArgs(argv));

(cleaned_aligns.empty())

& seqannot_align = annot->

().SetAlign();

(

&

: cleaned_aligns)

seqannot_align.push_back(

);

name(

);

pitem->

().SetAnnot(*annot);

#define SYMBOL_CADVANCEDCLEANUPPARAMSPANEL_STYLE

static void SetupArgDescriptions(CArgDescriptions &arg_desc)

virtual void x_CreateProjectItems()

override this function in derived classes and populate m_Items.

CAdvancedCleanupParams m_Params

CAdvancedCleanupJob(const CAdvancedCleanupParams &params)

virtual void SetRegistryPath(const string &path)

CAlgoToolManagerParamsPanel.

void SetObjects(TConstScopedObjects *objects)

CAdvancedCleanupParams & GetData()

void SetData(const CAdvancedCleanupParams &data)

virtual void LoadSettings()

bool Create(wxWindow *parent, wxWindowID id=ID_CADVANCEDCLEANUPPARAMSPANEL, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxSize(400, 300), long style=wxTAB_TRAVERSAL)

TConstScopedObjects GetObjects() const

int GetSplignDirection() const

TConstScopedObjects m_Objects

bool GetInvokeBest() const

CDataLoadingAppJob - a base class for Jobs loading data into projects.

void AddProjectItem(objects::CProjectItem &item)

void SetNameDesc(const string &name)

void SetCreateDate(const CTime &dt)

void SetTitleDesc(const string &title)

IRegSettings An interface for objects that save / restore settings using CGuiRegistry.

static void cleanup(void)

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define LOG_POST(message)

This macro is deprecated and it's strongly recomended to move in all projects (except tests) to macro...

void Error(CExceptionArgs_Base &args)

virtual string GetExtensionLabel() const

returns a displayable label for this extension ( please capitalize the key words - "My Extension" )

virtual bool x_CreateParamsPanelIfNeeded()

returns / creates Parameters panel, override in derived classes see cpp file for example

virtual IRegSettings * x_GetParamsAsRegSetting()

return a pointer to Parameters object as IRegSettings interface

CAdvancedCleanupParamsPanel * m_Panel

virtual void CleanUI()

override this function in a derived class and clean extra members

TConstScopedObjects m_Alignments

virtual bool x_ValidateParams()

validates user input in Parameters panel, report errors if any

virtual CAlgoToolManagerParamsPanel * x_GetParamsPanel()

returns a pointer to the parameters panel, override in derived classes

virtual void x_SelectCompatibleInputObjects()

virtual void InitUI()

override this function in a derived class and initialize extra members

CAdvancedCleanupParams m_Params

virtual string GetExtensionIdentifier() const

returns the unique human-readable identifier for the extension the id should use lowercase letters se...

virtual wxPanel * GetMaxPanel()

Return the panel that occupies max size on display, to calculate dialog window size.

virtual CDataLoadingAppJob * x_CreateLoadingJob()

factory method for creating the job that executes the tool algorithm override in derived classes

CAdvancedCleanupTool()

CAdvancedCleanupTool.

static void GetLabel(const CObject &obj, string *label, ELabelType type=eDefault)

string m_Descr

mutex to sync our internals

vector< SConstScopedObject > TConstScopedObjects

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

@ eCurrent

Use current time. See also CCurrentTime.

void SetLabel(const TLabel &value)

Assign a value to Label data member.

void SetItem(TItem &value)

Assign a value to Item data member.

void SetData(TData &value)

Assign a value to Data data member.

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