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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/add__flu__comments_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/packages/pkg_sequence_edit/add_flu_comments.cpp Source File

51  for

(; b_iter; ++b_iter)

59  if

(!taxname.empty() && !id_str.empty())

60

taxname_to_ids[taxname].

insert

(id_str);

64  for

(; b_iter2; ++b_iter2)

72  if

(!taxname.empty() && taxname_to_ids.

find

(taxname) != taxname_to_ids.

end

() && taxname_to_ids[taxname].

size

() > 1)

84

vector<string> id_vec;

85

pair<string,string> range;

86

pair<long,long> range_num;

92

id_vec.push_back(*

id

);

100  if

(!range.first.empty())

102  if

(num_id == range_num.second+1)

105

range_num.second = num_id;

109  if

( !range.second.empty())

111  if

(range_num.second > range_num.first+1)

112

id_vec.push_back(range.first+

"-"

+range.second);

115

id_vec.push_back(range.first);

116

id_vec.push_back(range.second);

122

id_vec.push_back(range.first);

126

range.second.clear();

127

range_num.first = num_id;

128

range_num.second = num_id;

131  if

(!range.first.empty())

133  if

( !range.second.empty())

135  if

(range_num.second > range_num.first+1)

136

id_vec.push_back(range.first+

"-"

+range.second);

139

id_vec.push_back(range.first);

140

id_vec.push_back(range.second);

146

id_vec.push_back(range.first);

158  string

new_comment =

"GenBank Accession Numbers "

+id_list+

" represent sequences from the "

+id_size+

" segments of "

+taxname;

184  if

((*it)->IsSource()) {

191  if

((*it)->IsSource()) {

const string & GetTaxname(void) const

bool IsSetTaxname(void) const

void AddCommand(IEditCommand &command)

Undo/Redo interface for editing operations.

virtual void Execute(IEditCommand *command, wxWindow *window=0)=0

const_iterator end() const

iterator_bool insert(const value_type &val)

const_iterator find(const key_type &key) const

const_iterator begin() const

const_iterator end() const

parent_type::const_iterator const_iterator

void GetLabel(string *label, ELabelType type=eDefault, TLabelFlags flags=fLabel_Default) const

Append a label for this Seq-id to the supplied string.

@ fLabel_GeneralDbIsContent

For type general, use the database name as the tag and the (text or numeric) key as the content.

@ eContent

Untagged human-readable accession or the like.

const CSeq_id & GetId(const CSeq_loc &loc, CScope *scope)

If all CSeq_ids embedded in CSeq_loc refer to the same CBioseq, returns the first CSeq_id found,...

@ eGetId_Best

return the "best" gi (uses FindBestScore(), with CSeq_id::CalculateScore() as the score function

CSeq_entry_Handle GetParentEntry(void) const

Get parent Seq-entry handle.

const CSeqFeatData & GetData(void) const

CSeq_entry_Handle GetSeq_entry_Handle(void) const

Get parent Seq-entry handle.

CConstRef< CSeq_entry > GetCompleteSeq_entry(void) const

Complete and get const reference to the seq-entry.

bool HasParentEntry(void) const

Check if current seq-entry has a parent.

CSeq_entry_Handle GetParentEntry(void) const

Get parent Seq-entry handle.

TObjectType * GetPointer(void) THROWS_NONE

Get pointer,.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static unsigned long StringToULong(const CTempString str, TStringToNumFlags flags=0, int base=10)

Convert string to unsigned long.

static string Join(const TContainer &arr, const CTempString &delim)

Join strings using the specified delimiter.

static enable_if< is_arithmetic< TNumeric >::value||is_convertible< TNumeric, Int8 >::value, string >::type NumericToString(TNumeric value, TNumToStringFlags flags=0, int base=10)

Convert numeric value to string.

@ fConvErr_NoThrow

Do not throw an exception on error.

@ fAllowLeadingSymbols

Ignore leading non-numeric characters.

static const char label[]

const TBiosrc & GetBiosrc(void) const

Get the variant data.

const TSet & GetSet(void) const

Get the variant data.

bool IsSet(void) const

Check if variant Set is selected.

TComment & SetComment(void)

Select the variant.

@ eMol_na

just a nucleic acid

#define FOR_EACH_SEQENTRY_ON_SEQSET(Itr, Var)

FOR_EACH_SEQENTRY_ON_SEQSET EDIT_EACH_SEQENTRY_ON_SEQSET.

#define FOR_EACH_SEQDESC_ON_SEQSET(Itr, Var)

FOR_EACH_SEQDESC_ON_SEQSET EDIT_EACH_SEQDESC_ON_SEQSET.

#define FOR_EACH_SEQDESC_ON_SEQENTRY(Itr, Var)

FOR_EACH_SEQDESC_ON_SEQENTRY EDIT_EACH_SEQDESC_ON_SEQENTRY.

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