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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/Variation__ref___8hpp_source.html below:

NCBI C++ ToolKit: include/objects/seqfeat/Variation_ref_.hpp Source File

eMethod_E_unknown = 0,

eMethod_E_bac_acgh = 1,

eMethod_E_computational = 2,

eMethod_E_curated = 3,

eMethod_E_digital_array = 4,

eMethod_E_expression_array = 5,

eMethod_E_flanking_sequence = 7,

eMethod_E_mcd_analysis = 9,

eMethod_E_oea_assembly = 11,

eMethod_E_oligo_acgh = 12,

eMethod_E_paired_end = 13,

eMethod_E_read_depth = 16,

eMethod_E_rt_pcr = 18,

eMethod_E_sequence_alignment = 20,

eMethod_E_sequencing = 21,

eMethod_E_snp_array = 22,

eMethod_E_snp_genoytyping = 23,

eMethod_E_southern = 24,

eMethod_E_western = 25,

eMethod_E_optical_mapping = 26,

eMethod_E_other = 255

eAllele_origin_unknown = 0,

eAllele_origin_germline = 1,

eAllele_origin_somatic = 2,

eAllele_origin_inherited = 4,

eAllele_origin_paternal = 8,

eAllele_origin_maternal = 16,

eAllele_origin_de_novo = 32,

eAllele_origin_biparental = 64,

eAllele_origin_uniparental = 128,

eAllele_origin_not_tested = 256,

eAllele_origin_tested_inconclusive = 512,

eAllele_origin_other = 1073741824

eAllele_state_unknown = 0,

eAllele_state_homozygous = 1,

eAllele_state_heterozygous = 2,

eAllele_state_hemizygous = 3,

eAllele_state_nullizygous = 4,

eAllele_state_other = 255

eData_set_type_unknown = 0,

eData_set_type_compound = 1,

eData_set_type_products = 2,

eData_set_type_haplotype = 3,

eData_set_type_genotype = 4,

eData_set_type_mosaic = 5,

eData_set_type_individual = 6,

eData_set_type_population = 7,

eData_set_type_alleles = 8,

eData_set_type_package = 9,

eData_set_type_other = 255

IsSetType(

)

;

CanGetType(

)

;

ResetType(

);

GetType(

)

;

& SetType(

);

IsSetVariations(

)

;

CanGetVariations(

)

;

ResetVariations(

);

IsSetName(

)

;

CanGetName(

)

;

ResetName(

);

& GetName(

)

;

& SetName(

);

ResetSelection(

);

E_Choice Which(

)

;

CheckSelected(E_Choice index)

;

NCBI_NORETURN

ThrowInvalidSelection(E_Choice index)

;

SelectionName(E_Choice index);

IsUnknown(

)

;

SetUnknown(

);

IsNote(

)

;

& GetNote(

)

;

& SetNote(

);

IsUniparental_disomy(

)

;

SetUniparental_disomy(

);

IsInstance(

)

;

& GetInstance(

)

;

IsSet(

)

;

& GetSet(

)

;

& SetSet(

);

IsComplex(

)

;

SetComplex(

);

*

sm_SelectionNames[];

NCBI_NS_NCBI::CUnionBuffer<NCBI_NS_STD::string>

;

IsSetPhase(

)

;

CanGetPhase(

)

;

ResetPhase(

);

GetPhase(

)

;

& SetPhase(

);

IsSetX_length(

)

;

CanGetX_length(

)

;

ResetX_length(

);

IsSetReference(

)

;

CanGetReference(

)

;

ResetReference(

);

& GetReference(

)

;

IsSetTest(

)

;

CanGetTest(

)

;

ResetTest(

);

& GetTest(

)

;

e_Loss_of_heterozygosity

ResetSelection(

);

E_Choice Which(

)

;

CheckSelected(E_Choice index)

;

NCBI_NORETURN

ThrowInvalidSelection(E_Choice index)

;

SelectionName(E_Choice index);

IsUnknown(

)

;

SetUnknown(

);

IsSplicing(

)

;

SetSplicing(

);

IsNote(

)

;

& GetNote(

)

;

& SetNote(

);

IsVariation(

)

;

& GetVariation(

)

;

IsFrameshift(

)

;

IsLoss_of_heterozygosity(

)

;

*

sm_SelectionNames[];

NCBI_NS_NCBI::CUnionBuffer<NCBI_NS_STD::string>

;

e__allMandatory = 0,

IsSetDescription(

)

;

CanGetDescription(

)

;

ResetDescription(

);

IsSetObject_id(

)

;

CanGetObject_id(

)

;

ResetObject_id(

);

& GetObject_id(

)

;

e__allMandatory = 0,

IsSetSource(

)

;

CanGetSource(

)

;

ResetSource(

);

& GetSource(

)

;

IsSetCondition(

)

;

CanGetCondition(

)

;

ResetCondition(

);

& GetCondition(

)

;

e__allMandatory = 0,

e_is_ancestral_allele,

IsSetId(

)

;

CanGetId(

)

;

ResetId(

);

& SetId(

);

IsSetParent_id(

)

;

CanGetParent_id(

)

;

ResetParent_id(

);

& GetParent_id(

)

;

IsSetSample_id(

)

;

CanGetSample_id(

)

;

ResetSample_id(

);

& GetSample_id(

)

;

IsSetOther_ids(

)

;

CanGetOther_ids(

)

;

ResetOther_ids(

);

& GetOther_ids(

)

;

IsSetName(

)

;

CanGetName(

)

;

ResetName(

);

& GetName(

)

;

& SetName(

);

IsSetSynonyms(

)

;

CanGetSynonyms(

)

;

ResetSynonyms(

);

& GetSynonyms(

)

;

IsSetDescription(

)

;

CanGetDescription(

)

;

ResetDescription(

);

IsSetPhenotype(

)

;

CanGetPhenotype(

)

;

ResetPhenotype(

);

& GetPhenotype(

)

;

IsSetMethod(

)

;

CanGetMethod(

)

;

ResetMethod(

);

& GetMethod(

)

;

IsSetPopulation_data(

)

;

CanGetPopulation_data(

)

;

ResetPopulation_data(

);

IsSetVariant_prop(

)

;

CanGetVariant_prop(

)

;

ResetVariant_prop(

);

IsSetValidated(

)

;

CanGetValidated(

)

;

ResetValidated(

);

IsSetClinical_test(

)

;

CanGetClinical_test(

)

;

ResetClinical_test(

);

IsSetAllele_origin(

)

;

CanGetAllele_origin(

)

;

ResetAllele_origin(

);

IsSetAllele_state(

)

;

CanGetAllele_state(

)

;

ResetAllele_state(

);

IsSetAllele_frequency(

)

;

CanGetAllele_frequency(

)

;

ResetAllele_frequency(

);

IsSetIs_ancestral_allele(

)

;

CanGetIs_ancestral_allele(

)

;

ResetIs_ancestral_allele(

);

IsSetPub(

)

;

CanGetPub(

)

;

ResetPub(

);

& GetPub(

)

;

& SetPub(

);

IsSetData(

)

;

CanGetData(

)

;

ResetData(

);

& GetData(

)

;

& SetData(

);

IsSetConsequence(

)

;

CanGetConsequence(

)

;

ResetConsequence(

);

IsSetLocation(

)

;

CanGetLocation(

)

;

ResetLocation(

);

& GetLocation(

)

;

IsSetExt_locs(

)

;

CanGetExt_locs(

)

;

ResetExt_locs(

);

& GetExt_locs(

)

;

IsSetExt(

)

;

CanGetExt(

)

;

ResetExt(

);

& GetExt(

)

;

& SetExt(

);

IsSetSomatic_origin(

)

;

CanGetSomatic_origin(

)

;

ResetSomatic_origin(

);

Reset(

);

(!CanGetType()) {

m_Variations;

m_Variations;

= std::forward<CVariation_ref_Base::C_Data::C_Set::TName>(

);

(index, reset, 0);

IsSetPhase();

(!CanGetPhase()) {

(!IsSetPhase()) {

IsSetX_length();

(!CanGetX_length()) {

m_X_length =

;

(!IsSetX_length()) {

IsSetReference();

(!CanGetReference()) {

m_Reference =

;

m_Reference = std::forward<CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::TReference>(

);

(!IsSetReference()) {

(!CanGetTest()) {

m_Test = std::forward<CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::TTest>(

);

(index, reset, 0);

== e_Loss_of_heterozygosity;

= std::forward<CVariation_ref_Base::C_E_Somatic_origin::C_Condition::TDescription>(

);

m_Source.NotEmpty();

IsSetSource();

(!CanGetSource()) {

m_Condition.NotEmpty();

IsSetCondition();

(!CanGetCondition()) {

(*m_Condition);

.NotEmpty();

= std::forward<CVariation_ref_Base::TName>(

);

.NotEmpty();

.NotEmpty();

Base class for all serializable objects.

Set of related Variations.

see http://www.hgvs.org/mutnomen/recs-prot.html

C_Loss_of_heterozygosity –.

condition related to this origin's type

static char UnassignedByte(void)

void ThrowUnassigned(TMemberIndex index) const

#define ENUM_METHOD_NAME(EnumName)

static string UnassignedString(void)

const CSeq_id & GetId(const CSeq_loc &loc, CScope *scope)

If all CSeq_ids embedded in CSeq_loc refer to the same CBioseq, returns the first CSeq_id found,...

bool NotEmpty(void) const THROWS_NONE

Check if CRef is not empty – pointing to an object and has a non-null value.

uint32_t Uint4

4-byte (32-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_SEQFEAT_EXPORT

DECLARE_INTERNAL_TYPE_INFO()

TAllele_origin GetAllele_origin(void) const

Get the Allele_origin member data.

TNote & SetNote(void)

Select the variant.

bool CanGetCondition(void) const

Check if it is safe to call GetCondition method.

const TVariant_prop & GetVariant_prop(void) const

Get the Variant_prop member data.

C_Loss_of_heterozygosity & operator=(const C_Loss_of_heterozygosity &)

bool CanGetObject_id(void) const

Check if it is safe to call GetObject_id method.

void SetComplex(void)

Select the variant.

bool CanGetName(void) const

Check if it is safe to call GetName method.

list< CRef< CDbtag > > m_Clinical_test

C_Data & operator=(const C_Data &)

bool IsSetSomatic_origin(void) const

Check if a value has been assigned to Somatic_origin data member.

list< CRef< CVariation_ref > > TVariations

C_Frameshift & operator=(const C_Frameshift &)

bool CanGetConsequence(void) const

Check if it is safe to call GetConsequence method.

bool CanGetTest(void) const

Check if it is safe to call GetTest method.

TDescription & SetDescription(void)

Assign a value to Description data member.

TIs_ancestral_allele & SetIs_ancestral_allele(void)

Assign a value to Is_ancestral_allele data member.

C_Loss_of_heterozygosity(const C_Loss_of_heterozygosity &)

bool CanGetAllele_frequency(void) const

Check if it is safe to call GetAllele_frequency method.

void ResetSelection(void)

Reset the selection (set it to e_not_set).

void ResetValidated(void)

Reset Validated data member.

CRef< TCondition > m_Condition

C_Condition(const C_Condition &)

C_E_Consequence(const C_E_Consequence &)

C_E_Consequence & operator=(const C_E_Consequence &)

bool IsUnknown(void) const

Check if variant Unknown is selected.

void Select(E_Choice index, EResetVariant reset=eDoResetVariant)

Select the requested variant if needed.

E_Choice Which(void) const

Which variant is currently selected.

void Select(E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)

Select the requested variant if needed, allocating CObject variants from memory pool.

CRef< TParent_id > m_Parent_id

bool IsSetPhase(void) const

Check if a value has been assigned to Phase data member.

TName & SetName(void)

Assign a value to Name data member.

bool IsSetCondition(void) const

Check if a value has been assigned to Condition data member.

bool CanGetMethod(void) const

Check if it is safe to call GetMethod method.

bool CanGetExt_locs(void) const

Check if it is safe to call GetExt_locs method.

void ResetAllele_frequency(void)

Reset Allele_frequency data member.

bool IsSetSample_id(void) const

Check if a value has been assigned to Sample_id data member.

void ThrowInvalidSelection(E_Choice index) const

Throw 'InvalidSelection' exception.

bool CanGetSource(void) const

Check if it is safe to call GetSource method.

bool CanGetExt(void) const

Check if it is safe to call GetExt method.

bool IsSetVariant_prop(void) const

variant properties bit fields Check if a value has been assigned to Variant_prop data member.

C_Frameshift(const C_Frameshift &)

bool IsSetAllele_origin(void) const

Check if a value has been assigned to Allele_origin data member.

NCBI_NS_NCBI::CSerialObject * m_object

bool CanGetLocation(void) const

Check if it is safe to call GetLocation method.

TValidated & SetValidated(void)

Assign a value to Validated data member.

list< CRef< CDbtag > > TOther_ids

TSomatic_origin & SetSomatic_origin(void)

Assign a value to Somatic_origin data member.

TType GetType(void) const

Get the Type member data.

TConsequence & SetConsequence(void)

Assign a value to Consequence data member.

list< CRef< CPhenotype > > m_Phenotype

const TSample_id & GetSample_id(void) const

Get the Sample_id member data.

bool CanGetData(void) const

Check if it is safe to call GetData method.

bool IsSetOther_ids(void) const

Check if a value has been assigned to Other_ids data member.

list< CRef< C_E_Consequence > > m_Consequence

double m_Allele_frequency

list< CRef< CPhenotype > > TPhenotype

bool CanGetAllele_state(void) const

Check if it is safe to call GetAllele_state method.

const TNote & GetNote(void) const

Get the variant data.

bool IsSetX_length(void) const

Check if a value has been assigned to X_length data member.

bool CanGetValidated(void) const

Check if it is safe to call GetValidated method.

list< CRef< CPopulation_data > > m_Population_data

bool IsSetPopulation_data(void) const

Note about SNP representation and pretinent fields: allele-frequency, population, quality-codes: The ...

bool CanGetVariant_prop(void) const

Check if it is safe to call GetVariant_prop method.

list< CRef< CDbtag > > m_Other_ids

const TSource & GetSource(void) const

Get the Source member data.

bool CanGetAllele_origin(void) const

Check if it is safe to call GetAllele_origin method.

const TId & GetId(void) const

Get the Id member data.

C_E_Somatic_origin(const C_E_Somatic_origin &)

NCBI_NS_NCBI::CUnionBuffer< NCBI_NS_STD::string > m_string

bool IsSetReference(void) const

In germline comparison, it will be reference genome assembly (default) or reference/normal population...

list< CRef< C_E_Somatic_origin > > TSomatic_origin

TX_length GetX_length(void) const

Get the X_length member data.

void SetUnknown(void)

Select the variant.

list< CRef< CVariation_ref > > m_Variations

bool IsSetPub(void) const

publication support.

bool IsSetConsequence(void) const

Check if a value has been assigned to Consequence data member.

void Select(E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)

Select the requested variant if needed, allocating CObject variants from memory pool.

void ResetAllele_state(void)

Reset Allele_state data member.

const TClinical_test & GetClinical_test(void) const

Get the Clinical_test member data.

TObject_id & SetObject_id(void)

Assign a value to Object_id data member.

TDescription & SetDescription(void)

Assign a value to Description data member.

bool IsSetAllele_frequency(void) const

NOTE: 'allele-frequency' here refers to the minor allele frequency of the default population DEPRECAT...

void CheckSelected(E_Choice index) const

Verify selection, throw exception if it differs from the expected.

DECLARE_INTERNAL_TYPE_INFO()

const TData & GetData(void) const

Get the Data member data.

void ResetPhase(void)

Reset Phase data member.

TData & SetData(void)

Assign a value to Data data member.

bool CanGetSynonyms(void) const

Check if it is safe to call GetSynonyms method.

const TPhenotype & GetPhenotype(void) const

Get the Phenotype member data.

void ResetData(void)

Reset Data data member.

bool IsSetPhenotype(void) const

phenotype Check if a value has been assigned to Phenotype data member.

TPhase & SetPhase(void)

Assign a value to Phase data member.

const TLocation & GetLocation(void) const

Get the Location member data.

E_Choice

Choice variants.

bool CanGetSomatic_origin(void) const

Check if it is safe to call GetSomatic_origin method.

Tparent::CMemberIndex< E_memberIndex, 3 > TmemberIndex

TValidated GetValidated(void) const

Get the Validated member data.

E_Choice

Choice variants.

list< CRef< CDbtag > > m_Object_id

DECLARE_INTERNAL_TYPE_INFO()

TExt_locs & SetExt_locs(void)

Assign a value to Ext_locs data member.

const TReference & GetReference(void) const

Get the Reference member data.

const TDescription & GetDescription(void) const

Get the Description member data.

void SetUnknown(void)

Select the variant.

bool IsSetType(void) const

Check if a value has been assigned to Type data member.

TClinical_test & SetClinical_test(void)

Assign a value to Clinical_test data member.

bool IsInstance(void) const

Check if variant Instance is selected.

bool IsSetDescription(void) const

Check if a value has been assigned to Description data member.

CRef< TLocation > m_Location

const TNote & GetNote(void) const

Get the variant data.

DECLARE_INTERNAL_TYPE_INFO()

const TName & GetName(void) const

Get the Name member data.

Tparent::CMemberIndex< E_memberIndex, 4 > TmemberIndex

bool IsSetAllele_state(void) const

Check if a value has been assigned to Allele_state data member.

list< CRef< C_E_Consequence > > TConsequence

EAllele_state

observed allele state, if known DEPRECATED: new field = VariantProperties.allele-state

NCBI_NS_NCBI::CUnionBuffer< NCBI_NS_STD::string > m_string

C_Condition & operator=(const C_Condition &)

TNote & SetNote(void)

Select the variant.

const TSomatic_origin & GetSomatic_origin(void) const

Get the Somatic_origin member data.

list< CRef< CPopulation_data > > TPopulation_data

bool CanGetName(void) const

Check if it is safe to call GetName method.

DECLARE_INTERNAL_TYPE_INFO()

void CheckSelected(E_Choice index) const

Verify selection, throw exception if it differs from the expected.

const TConsequence & GetConsequence(void) const

Get the Consequence member data.

bool TIs_ancestral_allele

bool IsSplicing(void) const

Check if variant Splicing is selected.

bool IsSetDescription(void) const

tag for comment and descriptions Check if a value has been assigned to Description data member.

bool IsSetIs_ancestral_allele(void) const

is this variant the ancestral allele? DEPRECATED: new field = VariantProperties.is-ancestral-allele C...

Tparent::CMemberIndex< E_memberIndex, 3 > TmemberIndex

C_E_Somatic_origin & operator=(const C_E_Somatic_origin &)

bool IsSetSynonyms(void) const

Check if a value has been assigned to Synonyms data member.

bool IsUniparental_disomy(void) const

Check if variant Uniparental_disomy is selected.

TOther_ids & SetOther_ids(void)

Assign a value to Other_ids data member.

Tparent::CMemberIndex< E_memberIndex, 25 > TmemberIndex

EAllele_origin

origin of this allele, if known note that these are powers-of-two, and represent bits; thus,...

bool IsSet(void) const

Check if variant Set is selected.

void ResetX_length(void)

Reset X_length data member.

list< CRef< CExt_loc > > m_Ext_locs

CRef< TVariant_prop > m_Variant_prop

bool IsSetMethod(void) const

Check if a value has been assigned to Method data member.

TAllele_state & SetAllele_state(void)

Assign a value to Allele_state data member.

bool IsSetParent_id(void) const

Check if a value has been assigned to Parent_id data member.

CVariation_ref TVariation

bool IsSetClinical_test(void) const

link-outs to GeneTests database DEPRECATED - do not use Check if a value has been assigned to Clinica...

CVariantProperties TVariant_prop

const TObject_id & GetObject_id(void) const

Get the Object_id member data.

TAllele_frequency GetAllele_frequency(void) const

Get the Allele_frequency member data.

bool IsLoss_of_heterozygosity(void) const

Check if variant Loss_of_heterozygosity is selected.

void ResetAllele_origin(void)

Reset Allele_origin data member.

const TParent_id & GetParent_id(void) const

Get the Parent_id member data.

NCBI_NS_NCBI::CUnionBuffer< NCBI_NS_STD::string > m_string

const TTest & GetTest(void) const

Get the Test member data.

bool IsSetName(void) const

Check if a value has been assigned to Name data member.

bool IsUnknown(void) const

Check if variant Unknown is selected.

TVariations & SetVariations(void)

Assign a value to Variations data member.

TSynonyms & SetSynonyms(void)

Assign a value to Synonyms data member.

bool IsSetTest(void) const

Name of the testing subject type or the testing tissue.

bool IsSetLocation(void) const

Observed location, if different from the parent set or feature.location.

TMethod & SetMethod(void)

Assign a value to Method data member.

Tparent::CMemberIndex< E_memberIndex, 3 > TmemberIndex

bool CanGetVariations(void) const

Check if it is safe to call GetVariations method.

bool m_Is_ancestral_allele

bool IsSetValidated(void) const

has this variant been validated? DEPRECATED: new field = VariantProperties.other-validation Check if ...

CRef< TSample_id > m_Sample_id

void SetUniparental_disomy(void)

Select the variant.

const TName & GetName(void) const

Get the Name member data.

TType & SetType(void)

Assign a value to Type data member.

C_Loss_of_heterozygosity TLoss_of_heterozygosity

DECLARE_INTERNAL_TYPE_INFO()

TPopulation_data & SetPopulation_data(void)

Assign a value to Population_data data member.

const TPopulation_data & GetPopulation_data(void) const

Get the Population_data member data.

bool CanGetParent_id(void) const

Check if it is safe to call GetParent_id method.

TName & SetName(void)

Assign a value to Name data member.

TIs_ancestral_allele GetIs_ancestral_allele(void) const

Get the Is_ancestral_allele member data.

bool IsSetVariations(void) const

Check if a value has been assigned to Variations data member.

TAllele_origin & SetAllele_origin(void)

Assign a value to Allele_origin data member.

const TCondition & GetCondition(void) const

Get the Condition member data.

bool CanGetPub(void) const

Check if it is safe to call GetPub method.

bool IsSetSource(void) const

description of the somatic origin itself Check if a value has been assigned to Source data member.

E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

bool IsSetId(void) const

ids (i.e., SNP rsid / ssid, dbVar nsv/nssv) expected values include 'dbSNP|rs12334',...

list< CRef< CExt_loc > > TExt_locs

bool IsFrameshift(void) const

Check if variant Frameshift is selected.

bool CanGetSample_id(void) const

Check if it is safe to call GetSample_id method.

bool CanGetPopulation_data(void) const

Check if it is safe to call GetPopulation_data method.

TTest & SetTest(void)

Assign a value to Test data member.

bool CanGetReference(void) const

Check if it is safe to call GetReference method.

CVariation_ref_Base(const CVariation_ref_Base &)

void ResetIs_ancestral_allele(void)

Reset Is_ancestral_allele data member.

bool CanGetDescription(void) const

Check if it is safe to call GetDescription method.

void DoSelect(E_Choice index, CObjectMemoryPool *pool=0)

const TDescription & GetDescription(void) const

Get the Description member data.

bool CanGetOther_ids(void) const

Check if it is safe to call GetOther_ids method.

TAllele_frequency & SetAllele_frequency(void)

Assign a value to Allele_frequency data member.

bool CanGetClinical_test(void) const

Check if it is safe to call GetClinical_test method.

TPhase GetPhase(void) const

Get the Phase member data.

bool CanGetX_length(void) const

Check if it is safe to call GetX_length method.

const TExt_locs & GetExt_locs(void) const

Get the Ext_locs member data.

Tparent::CMemberIndex< E_memberIndex, 3 > TmemberIndex

bool CanGetPhase(void) const

Check if it is safe to call GetPhase method.

bool CanGetPhenotype(void) const

Check if it is safe to call GetPhenotype method.

const TOther_ids & GetOther_ids(void) const

Get the Other_ids member data.

bool IsSetExt_locs(void) const

reference other locs, e.g.

bool CanGetIs_ancestral_allele(void) const

Check if it is safe to call GetIs_ancestral_allele method.

bool IsSetObject_id(void) const

reference to BioTerm / other descriptive database Check if a value has been assigned to Object_id dat...

bool IsSetName(void) const

names and synonyms some variants have well-known canonical names and possible accepted synonyms Check...

E_Choice Which(void) const

Which variant is currently selected.

const TExt & GetExt(void) const

Get the Ext member data.

TX_length & SetX_length(void)

Assign a value to X_length data member.

C_Set & operator=(const C_Set &)

TReference & SetReference(void)

Assign a value to Reference data member.

void Select(E_Choice index, EResetVariant reset=eDoResetVariant)

Select the requested variant if needed.

bool CanGetId(void) const

Check if it is safe to call GetId method.

const TPub & GetPub(void) const

Get the Pub member data.

list< string > m_Synonyms

CVariation_inst TInstance

const TMethod & GetMethod(void) const

Get the Method member data.

bool IsNote(void) const

Check if variant Note is selected.

list< CRef< CDbtag > > TClinical_test

CVariation_ref_Base & operator=(const CVariation_ref_Base &)

bool IsNote(void) const

Check if variant Note is selected.

bool IsVariation(void) const

Check if variant Variation is selected.

NCBI_NS_NCBI::CSerialObject * m_object

bool CanGetType(void) const

Check if it is safe to call GetType method.

void ResetType(void)

Reset Type data member.

bool IsSetExt(void) const

DEPRECATED - do not use; use Seq-feat.exts instead Check if a value has been assigned to Ext data mem...

const TVariations & GetVariations(void) const

Get the Variations member data.

DECLARE_INTERNAL_TYPE_INFO()

bool IsSetData(void) const

Check if a value has been assigned to Data data member.

void SetSplicing(void)

Select the variant.

TPhenotype & SetPhenotype(void)

Assign a value to Phenotype data member.

list< CRef< C_E_Somatic_origin > > m_Somatic_origin

const TSynonyms & GetSynonyms(void) const

Get the Synonyms member data.

E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

list< CRef< CDbtag > > TObject_id

DECLARE_INTERNAL_TYPE_INFO()

bool IsComplex(void) const

Check if variant Complex is selected.

bool CanGetDescription(void) const

Check if it is safe to call GetDescription method.

TAllele_state GetAllele_state(void) const

Get the Allele_state member data.

@ e_Variation

Describe resulting variation in the product, e.g. missense, nonsense, silent, neutral,...

@ e_Splicing

some effect on splicing

@ e_Complex

variant is a complex and undescribed change at the location This type of variant is known to occur in...

@ e_Instance

actual sequence-edit at feat.location

@ e_not_set

No variant selected.

const GenericPointer< typename T::ValueType > T2 value

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