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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/VariantProperties___8cpp_source.html below:

NCBI C++ ToolKit: src/objects/seqfeat/VariantProperties_.cpp Source File

(

, eResource_link_submitterLinkout);

(

, eGene_location_in_start_codon);

(

, eGene_location_conserved_noncoding);

(

, eMapping_has_assembly_conflict);

(

, eMapping_is_assembly_specific);

(

, eMap_weight_is_uniquely_placed);

(

, eMap_weight_placed_twice_on_same_chrom);

(

, eMap_weight_placed_twice_on_diff_chrom);

(

, eMap_weight_many_placements);

(

, eFrequency_based_validation_is_mutation);

(

, eFrequency_based_validation_above_5pct_all);

(

, eFrequency_based_validation_above_5pct_1plus);

(

, eFrequency_based_validation_validated);

(

, eFrequency_based_validation_above_1pct_all);

(

, eFrequency_based_validation_above_1pct_1plus);

(

, eGenotype_in_haplotype_set);

(

, eQuality_check_contig_allele_missing);

(

, eQuality_check_withdrawn_by_submitter);

(

, eQuality_check_non_overlapping_alleles);

(

, eQuality_check_strain_specific);

(

, eQuality_check_genotype_conflict);

(

, eConfidence_likely_artifact);

(

, eAllele_origin_tested_inconclusive);

(

, m_Frequency_based_validation, EFrequency_based_validation)->SetSetFlag(

(m_set_State[0]))->SetOptional();

(

, m_Project_data, STL_list_set, (

, (

)))->SetSetFlag(

(m_set_State[0]))->SetOptional();

->RandomOrder();

->CodeVersion(22400);

->DataSpec(ncbi::EDataSpec::eASN);

: m_Version(0), m_Resource_link((

)(0)), m_Gene_location((

)(0)), m_Effect((

)(0)), m_Mapping((

)(0)), m_Map_weight((

)(0)), m_Frequency_based_validation((

)(0)), m_Genotype((

)(0)), m_Quality_check((

)(0)), m_Confidence((

)(0)), m_Other_validation(0), m_Allele_origin((

)(0)), m_Allele_state((

)(0)), m_Allele_frequency(0), m_Is_ancestral_allele(0)

User-defined methods of the data storage class.

BEGIN_NAMED_BASE_CLASS_INFO("VariantProperties", CVariantProperties)

BEGIN_NAMED_ENUM_IN_INFO("", CVariantProperties_Base::, EResource_link, true)

Historically, the dbSNP definitions document data structures used in the processing and annotation of...

#define MEMBER_PTR(MemberName)

#define SET_ENUM_INTERNAL_NAME(OwnerName, MemberName)

#define ADD_NAMED_MEMBER(MemberAlias, MemberName, TypeMacro, TypeMacroArgs)

#define SET_ENUM_MODULE(ModuleName)

#define ADD_NAMED_STD_MEMBER(MemberAlias, MemberName)

#define SET_CLASS_MODULE(ModuleName)

#define ADD_NAMED_ENUM_MEMBER(MemberAlias, MemberName, EnumName)

#define ADD_ENUM_VALUE(EnumValueName, EnumValueValue)

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

void ResetResource_link(void)

Reset Resource_link data member.

virtual ~CVariantProperties_Base(void)

void ResetGene_location(void)

Reset Gene_location data member.

void ResetOther_validation(void)

Reset Other_validation data member.

void ResetAllele_state(void)

Reset Allele_state data member.

void ResetAllele_frequency(void)

Reset Allele_frequency data member.

void ResetAllele_origin(void)

Reset Allele_origin data member.

void ResetProject_data(void)

Reset Project_data data member.

EFrequency_based_validation

list< int > m_Project_data

void ResetMapping(void)

Reset Mapping data member.

void ResetMap_weight(void)

Reset Map_weight data member.

void ResetConfidence(void)

Reset Confidence data member.

virtual void Reset(void)

Reset the whole object.

EResource_link

NOTE: The format for most of these values is as an integer Unless otherwise noted,...

void ResetFrequency_based_validation(void)

Reset Frequency_based_validation data member.

void ResetIs_ancestral_allele(void)

Reset Is_ancestral_allele data member.

void ResetEffect(void)

Reset Effect data member.

void ResetVersion(void)

Reset Version data member.

EAllele_origin

origin of this allele, if known note that these are powers-of-two, and represent bits; thus,...

EMap_weight

map-weight captures specificity of placement NOTE: This is *NOT* a bitfield

void ResetQuality_check(void)

Reset Quality_check data member.

EAllele_state

observed allele state, if known NOTE: THIS IS NOT A BITFIELD!

void ResetGenotype(void)

Reset Genotype data member.

CVariantProperties_Base(void)

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