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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/ValidErrItem_8hpp_source.html below:

NCBI C++ ToolKit: include/objects/valerr/ValidErrItem.hpp Source File

GetErrCode()

;

GetErrCount();

GetErrGroup()

;

GetVerbose()

;

IsSetObject()

;

& ConvertSeverity(

sev);

& ConvertErrGroup(

);

ConvertToErrCode(

&

);

IsSetContext()

;

SetFeatureObjDescFromFields();

& obj_desc,

seq_offset = 0);

sm_Terse[];

sm_Verbose[];

@ eErr_SEQ_ALIGN_SegsDimSeqIdNotMatch

@ eErr_SEQ_PKG_PartsSetMixedBioseqs

@ eErr_SEQ_DESCR_StructuredCommentPrefixOrSuffixMissing

@ eErr_SEQ_DESCR_DBLinkBadBioSample

@ eErr_SEQ_FEAT_WrongQualOnImpFeat

@ eErr_SEQ_FEAT_NotSpliceConsensusAcceptor

@ eErr_SEQ_DESCR_BadPlastidName

@ eErr_SEQ_DESCR_ObsoleteSourceQual

@ eErr_SEQ_FEAT_PartialProblemMismatch5Prime

@ eErr_SEQ_FEAT_rRNADoesNotHaveProduct

@ eErr_SEQ_GRAPH_GraphACGTScoreMany

@ eErr_SEQ_DESCR_MissingEnvironmentalSample

@ eErr_SEQ_INST_HighNContent

@ eErr_SEQ_DESCR_ObsoleteSourceLocation

@ eErr_SEQ_FEAT_CDSmRNAmismatch

@ eErr_SEQ_INST_HTGS_STS_GSS_WGSshouldNotBeRNA

@ eErr_SEQ_INST_BadDeltaSeq

@ eErr_SEQ_DESCR_TaxonomyConsultRequired

@ eErr_GENERIC_BadFirstName

@ eErr_SEQ_DESCR_InconsistentBioSources_ConLocation

@ eErr_SEQ_INST_FarFetchFailure

@ eErr_SEQ_FEAT_WholeLocation

@ eErr_SEQ_FEAT_mRNAgeneRange

@ eErr_SEQ_FEAT_SegmentedGeneProblem

@ eErr_SEQ_DESCR_BINDoesNotMatch

@ eErr_SEQ_DESCR_MissingPlasmidLocation

@ eErr_SEQ_DESCR_FinishedStatusForWGS

@ eErr_SEQ_DESCR_InconsistentTaxName

@ eErr_GENERIC_MissingPubRequirement

@ eErr_GENERIC_MissingVolume

@ eErr_SEQ_DESCR_DBLinkBadCapitalization

@ eErr_SEQ_PKG_InconsistentMolInfoBiomols

@ eErr_SEQ_FEAT_MobileElementInvalidQualifier

@ eErr_SEQ_FEAT_EcNumberProblem

@ eErr_SEQ_FEAT_TRNAinsideTMRNA

@ eErr_SEQ_FEAT_DuplicateAnticodonInterval

@ eErr_SEQ_INST_CompleteGenomeHasGaps

@ eErr_SEQ_INST_BadSeqIdCharacter

@ eErr_SEQ_FEAT_CDShasTooManyXs

@ eErr_SEQ_FEAT_ShortTRNAIntron

@ eErr_SEQ_FEAT_TranslExceptPhase

@ eErr_SEQ_FEAT_MinusStrandProtein

@ eErr_SEQ_FEAT_NotSpliceConsensusDonor

@ eErr_GENERIC_AuthorListHasEtAl

@ eErr_SEQ_INST_CompleteTitleProblem

@ eErr_SEQ_INST_HistoryGiCollision

@ eErr_SEQ_DESCR_BadNullCountry

@ eErr_SEQ_DESCR_UnwantedCompleteFlag

@ eErr_SEQ_INST_mRNAshouldBeSingleStranded

@ eErr_SEQ_FEAT_GeneXrefWithoutLocus

@ eErr_SEQ_FEAT_MultipleGenCodes

@ eErr_SEQ_DESCR_DBLinkBadAssembly

@ eErr_SEQ_FEAT_BadLocation

@ eErr_SEQ_DESCR_InvalidTissueType

@ eErr_SEQ_ALIGN_LenLessthanZero

@ eErr_SEQ_FEAT_GenesInconsistent

@ eErr_SEQ_DESCR_BadStrucCommInvalidSuffix

@ eErr_SEQ_DESCR_WGSmasterLacksBioProject

@ eErr_SEQ_DESCR_LatLonWater

@ eErr_SEQ_FEAT_FeatureRefersToAccession

@ eErr_SEQ_INST_HighNContentStretch

@ eErr_SEQ_PKG_NoBioseqFound

@ eErr_SEQ_DESCR_TaxonomyServiceProblem

@ eErr_SEQ_INST_HighNcontent3Prime

@ eErr_SEQ_INST_TerminalGap

@ eErr_SEQ_FEAT_PseudoRnaHasProduct

@ eErr_SEQ_FEAT_EcNumberDataMissing

@ eErr_SEQ_DESCR_InconsistentBioSources

@ eErr_SEQ_GRAPH_GraphDiffNumber

@ eErr_SEQ_FEAT_InvalidProductOnGene

@ eErr_SEQ_INST_MultipleAccessions

@ eErr_GENERIC_PastReleaseDate

@ eErr_SEQ_DESCR_BioSourceDbTagConflict

@ eErr_SEQ_DESCR_MultipleDBLinkObjects

@ eErr_SEQ_INST_BadProteinStart

@ eErr_SEQ_FEAT_BadRRNAcomponentOverlapTRNA

@ eErr_SEQ_FEAT_mRNAUnnecessaryException

@ eErr_SEQ_FEAT_UnknownImpFeatQual

@ eErr_SEQ_FEAT_DuplicateExonInterval

@ eErr_GENERIC_UnnecessaryPubEquiv

@ eErr_SEQ_FEAT_PartialProblem3Prime

@ eErr_SEQ_DESCR_BadGenomeRepresentation

@ eErr_SEQ_FEAT_ProductShouldBeWhole

@ eErr_SEQ_DESCR_InconsistentMolTypeBiomol

@ eErr_GENERIC_InvalidAsn

@ eErr_SEQ_INST_ProteinShouldNotHaveGaps

@ eErr_SEQ_GRAPH_GraphNScore

@ eErr_SEQ_INST_ESTshouldBemRNA

@ eErr_SEQ_DESCR_TaxonomyBlankSample

@ eErr_SEQ_DESCR_MissingPersonalCollectionName

@ eErr_SEQ_FEAT_InvalidCodonStart

@ eErr_SEQ_DESCR_BadKeywordUnverified

@ eErr_SEQ_FEAT_ITSdoesNotAbutRRNA

@ eErr_SEQ_DESCR_BioSourceOnProtein

@ eErr_SEQ_DESCR_LatLonRange

@ eErr_SEQ_DESCR_MultipleBioSources

@ eErr_SEQ_FEAT_SuspiciousFrame

@ eErr_SEQ_DESCR_InconsistentProteinTitle

@ eErr_SEQ_FEAT_InvalidCompareBadAccession

@ eErr_SEQ_FEAT_UnnecessaryTranslExcept

@ eErr_SEQ_DESCR_InvalidMolInfo

@ eErr_SEQ_FEAT_InvalidFeatureForNucleotide

@ eErr_SEQ_DESCR_InconsistentMolInfoTechnique

@ eErr_GENERIC_BarcodeStructuredVoucher

@ eErr_SEQ_GRAPH_GraphBioseqId

@ eErr_SEQ_FEAT_InvalidCompareMissingVersion

@ eErr_SEQ_DESCR_NoOrganismInTitle

@ eErr_SEQ_FEAT_InvalidRptUnitRange

@ eErr_SEQ_DESCR_LatLonPrecision

@ eErr_SEQ_DESCR_InconsistentMolInfo

@ eErr_SEQ_FEAT_MixedStrand

@ eErr_SEQ_INST_TSAMasterLacksStrucComm

@ eErr_SEQ_DESCR_BadAssemblyName

@ eErr_SEQ_INST_WholeComponent

@ eErr_SEQ_FEAT_BadRRNAcomponentOrder

@ eErr_SEQ_DESCR_DuplicatePCRPrimerSequence

@ eErr_SEQ_FEAT_BadGeneOntologyFormat

@ eErr_SEQ_INST_ReprInvalid

@ eErr_SEQ_INST_GenomeSeqGapProblem

@ eErr_SEQ_DESCR_LatLonCountry

@ eErr_GENERIC_MissingPubInfo

@ eErr_SEQ_PKG_NucProtSetHasTitle

@ eErr_SEQ_DESCR_RefGeneTrackingOnNucProtSet

@ eErr_SEQ_INST_TSAseqGapProblem

@ eErr_SEQ_FEAT_IllegalDbXref

@ eErr_SEQ_ALIGN_AlignDimSeqIdNotMatch

@ eErr_SEQ_FEAT_MultipleBioseqs

@ eErr_SEQ_DESCR_StrucCommMissingUserObject

@ eErr_GENERIC_SgmlPresentInText

@ eErr_GENERIC_DuplicateIDs

@ eErr_SEQ_DESCR_LatLonAdjacent

@ eErr_SEQ_ALIGN_SeqIdProblem

@ eErr_SEQ_INST_HTGS_STS_GSS_WGSshouldBeGenomic

@ eErr_GENERIC_MissingPagesEpub

@ eErr_GENERIC_MissingISOJTA

@ eErr_SEQ_FEAT_PartialsInconsistentCDSProtein

@ eErr_SEQ_DESCR_BadStrucCommInvalidFieldName

@ eErr_SEQ_PKG_SegSetProblem

@ eErr_SEQ_DESCR_EmptyOrgInput

@ eErr_SEQ_INST_SeqLitDataLength0

@ eErr_SEQ_FEAT_BadAnticodonAA

@ eErr_SEQ_FEAT_MissingCDSproduct

@ eErr_SEQ_DESCR_BadStrucCommInvalidFieldValue

@ eErr_SEQ_GRAPH_GraphOverlap

@ eErr_SEQ_INST_CircBactGenomeProblem

@ eErr_SEQ_FEAT_RnaProductMismatch

@ eErr_SEQ_DESCR_UnstructuredVoucher

@ eErr_SEQ_INST_WGSMasterLacksStrucComm

@ eErr_SEQ_DESCR_TaxonomyIsMetagenome

@ eErr_SEQ_DESCR_BadVariety

@ eErr_SEQ_FEAT_FeatureBeginsOrEndsInGap

@ eErr_SEQ_DESCR_BadInstitutionGeoLocName

@ eErr_SEQ_FEAT_TranslExceptAndRnaEditing

@ eErr_SEQ_DESCR_LatLonOffshore

@ eErr_SEQ_ALIGN_SegsStartsMismatch

@ eErr_SEQ_DESCR_TaxonomyNucleomorphProblem

@ eErr_SEQ_INST_ContigsTooShort

@ eErr_GENERIC_BarcodeTooManyNs

@ eErr_SEQ_FEAT_EcNumberInProteinName

@ eErr_SEQ_GRAPH_GraphByteLen

@ eErr_SEQ_DESCR_BadTypeMaterial

@ eErr_SEQ_FEAT_InvalidTRNAdata

@ eErr_SEQ_PKG_BioseqSetClassNotSet

@ eErr_SEQ_FEAT_SuspiciousGeneXref

@ eErr_SEQ_DESCR_NoMolInfoFound

@ eErr_SEQ_DESCR_OrgModMissingValue

@ eErr_SEQ_FEAT_UnnecessaryException

@ eErr_SEQ_DESCR_SerialInComment

@ eErr_SEQ_FEAT_AssemblyGapFeatureProblem

@ eErr_SEQ_FEAT_OldLocusTagWithoutLocusTag

@ eErr_SEQ_PKG_OrphanedProtein

@ eErr_SEQ_DESCR_NoOrgFound

@ eErr_SEQ_FEAT_NotSpliceConsensusAcceptorTerminalIntron

@ eErr_SEQ_INST_SeqGapBadLinkage

@ eErr_SEQ_FEAT_AnticodonMixedStrand

@ eErr_SEQ_FEAT_PartialProblemMismatch3Prime

@ eErr_SEQ_DESCR_BadPunctuation

@ eErr_SEQ_FEAT_UnparsedtRNAProduct

@ eErr_SEQ_FEAT_MissingProteinName

@ eErr_SEQ_DESCR_BadPCRPrimerSequence

@ eErr_SEQ_FEAT_InconsistentPseudogeneValue

@ eErr_SEQ_FEAT_GeneXrefWithoutGene

@ eErr_SEQ_ALIGN_PercentIdentity

@ eErr_SEQ_INST_SelfReferentialSequence

@ eErr_SEQ_DESCR_TransgenicProblem

@ eErr_SEQ_INST_DeltaComponentIsGi0

@ eErr_GENERIC_BarcodeLowTrace

@ eErr_SEQ_FEAT_ReplacedEcNumber

@ eErr_SEQ_PKG_MissingSetTitle

@ eErr_SEQ_DESCR_UnnecessaryBioSourceFocus

@ eErr_SEQ_FEAT_PartialsInconsistent

@ eErr_SEQ_FEAT_InvalidQualifierValue

@ eErr_SEQ_FEAT_CDSmRNANotMatched

@ eErr_GENERIC_BadPageNumbering

@ eErr_SEQ_FEAT_FeatContentDup

@ eErr_SEQ_INST_MolNotSet

@ eErr_SEQ_DESCR_WGSMasterLacksBothBioSampleBioProject

@ eErr_SEQ_INST_GiWithoutAccession

@ eErr_SEQ_DESCR_RefGeneTrackingIllegalStatus

@ eErr_SEQ_DESCR_TitleMissingText

@ eErr_SEQ_FEAT_GeneOntologyTermMissingGOID

@ eErr_SEQ_FEAT_DuplicateGeneOntologyTerm

@ eErr_SEQ_FEAT_ProtRefHasNoData

@ eErr_SEQ_GRAPH_GraphSeqLocLen

@ eErr_SEQ_ANNOT_AnnotIDs

@ eErr_SEQ_INST_MissingGaps

@ eErr_SEQ_FEAT_SeqLocTypeProblem

@ eErr_SEQ_FEAT_NotSpliceConsensusDonorTerminalIntron

@ eErr_SEQ_DESCR_InvalidForType

@ eErr_SEQ_PKG_PartsSetHasSets

@ eErr_SEQ_DESCR_LatLonValue

@ eErr_SEQ_FEAT_BadRRNAcomponentOverlapRRNA

@ eErr_SEQ_DESCR_FastaBracketTitle

@ eErr_SEQ_FEAT_InternalStop

@ eErr_SEQ_FEAT_FeatureCitationProblem

@ eErr_SEQ_FEAT_MisMatchAA

@ eErr_SEQ_DESCR_OrganismIsUndefinedSpecies

@ eErr_SEQ_INST_StopInProtein

@ eErr_SEQ_DESCR_TaxonomyPlastidsProblem

@ eErr_SEQ_DESCR_IdenticalInstitutionCode

@ eErr_SEQ_PKG_ImproperlyNestedSets

@ eErr_SEQ_FEAT_BadTrnaAA

@ eErr_SEQ_DESCR_BacteriaMissingSourceQualifier

@ eErr_GENERIC_MissingPages

@ eErr_SEQ_INST_UnknownLengthGapNot100

@ eErr_SEQ_FEAT_WrongQualOnFeature

@ eErr_SEQ_DESCR_BadCountryCapitalization

@ eErr_SEQ_FEAT_MultipleProtRefs

@ eErr_SEQ_GRAPH_GraphGapScore

@ eErr_GENERIC_MedlineEntryPub

@ eErr_SEQ_FEAT_ProductFetchFailure

@ eErr_SEQ_FEAT_MultipleEquivPublications

@ eErr_SEQ_ALIGN_DensegLenStart

@ eErr_SEQ_PKG_SeqSubmitWithWgsSet

@ eErr_SEQ_FEAT_InconsistentPseudogeneCounts

@ eErr_SEQ_PKG_InconsistentMoltypeSet

@ eErr_SEQ_INST_ConflictingBiomolTech

@ eErr_SEQ_FEAT_MismatchedAllele

@ eErr_SEQ_FEAT_RepeatSeqDoNotMatch

@ eErr_SEQ_DESCR_DBLinkProblem

@ eErr_SEQ_FEAT_MissingQualOnImpFeat

@ eErr_SEQ_FEAT_InvalidRptUnitSeqCharacters

@ eErr_GENERIC_BarcodeMissingCountry

@ eErr_SEQ_PKG_INSDRefSeqPackaging

@ eErr_SEQ_FEAT_GenCodeMismatch

@ eErr_SEQ_FEAT_TranscriptLen

@ eErr_SEQ_FEAT_RubiscoProblem

@ eErr_SEQ_FEAT_InvalidAlleleDuplicates

@ eErr_SEQ_FEAT_ImpCDSnotPseudo

@ eErr_SEQ_FEAT_LocusCollidesWithLocusTag

@ eErr_SEQ_INST_InvalidLen

@ eErr_SEQ_FEAT_PseudoCdsHasProduct

@ eErr_SEQ_DESCR_TPAassemblyWithoutTPAKeyword

@ eErr_SEQ_PKG_GPSnonGPSPackaging

@ eErr_SEQ_DESCR_InvalidForTypeGIBB

@ eErr_SEQ_FEAT_InvalidFeatureForProtein

@ eErr_SEQ_FEAT_BadCDScomponentOverlapTRNA

@ eErr_SEQ_FEAT_BadEcNumberValue

@ eErr_SEQ_FEAT_EcNumberEmpty

@ eErr_SEQ_INST_HighNContentPercent

@ eErr_SEQ_DESCR_RefGeneTrackingOnNonRefSeq

@ eErr_SEQ_DESCR_BadCollectionDate

@ eErr_SEQ_DESCR_BadContigOrScaffoldChromosome

@ eErr_SEQ_FEAT_ImpCDShasTranslation

@ eErr_SEQ_FEAT_IdenticalGeneSymbolAndSynonym

@ eErr_SEQ_FEAT_MultipleEquivBioSources

@ eErr_SEQ_FEAT_ProductLength

@ eErr_SEQ_FEAT_CdTransFail

@ eErr_SEQ_FEAT_BadCDScomment

@ eErr_SEQ_INST_HighNcontent5Prime

@ eErr_SEQ_DESCR_StrainContainsTaxInfo

@ eErr_SEQ_FEAT_CDSwithNoMRNAOverlap

@ eErr_SEQ_DESCR_BadInstitutionCode

@ eErr_SEQ_FEAT_NoProtein

@ eErr_SEQ_FEAT_MultipleCDSproducts

@ eErr_SEQ_FEAT_PeptideFeatOutOfFrame

@ eErr_SEQ_INST_TSAshouldBNotBeDNA

@ eErr_SEQ_DESCR_MissingChromosome

@ eErr_SEQ_FEAT_ProteinNameHasPMID

@ eErr_SEQ_FEAT_ImpFeatBadLoc

@ eErr_SEQ_FEAT_EcNumberInCDSComment

@ eErr_SEQ_DESCR_MoltypeUnknown

@ eErr_SEQ_FEAT_MissingQualOnFeature

@ eErr_SEQ_FEAT_ShortExon

@ eErr_SEQ_INST_BadProteinMoltype

@ eErr_SEQ_FEAT_PolyAsiteNotPoint

@ eErr_SEQ_FEAT_RepeatRegionNeedsNote

@ eErr_SEQ_DESCR_BadAltitude

@ eErr_SEQ_FEAT_StartCodon

@ eErr_SEQ_FEAT_FeatureLocationIsGi0

@ eErr_SEQ_DESCR_NucleotideTechniqueOnProtein

@ eErr_SEQ_PKG_InconsistentAutodef

@ eErr_SEQ_FEAT_SuspiciousQualifierValue

@ eErr_SEQ_FEAT_GeneXrefStrandProblem

@ eErr_SEQ_FEAT_NotSpliceConsensus

@ eErr_GENERIC_BarcodeFrameShift

@ eErr_SEQ_INST_CompleteCircleProblem

@ eErr_SEQ_DESCR_LatLonGeoLocName

@ eErr_SEQ_FEAT_PolyATail

@ eErr_SEQ_FEAT_MissingTrnaAA

@ eErr_SEQ_DESCR_TaxonomyNoCommonAncestor

@ eErr_GENERIC_NonAsciiAsn

@ eErr_SEQ_FEAT_CDSwithMultipleMRNAs

@ eErr_SEQ_FEAT_CDSmRNAMismatchProteinIDs

@ eErr_SEQ_GRAPH_GraphNScoreMany

@ eErr_SEQ_FEAT_InvalidOperonMatchesGene

@ eErr_SEQ_FEAT_UnparsedtRNAAnticodon

@ eErr_SEQ_FEAT_CollidingFeatureIDs

@ eErr_SEQ_DESCR_TitleHasPMID

@ eErr_SEQ_FEAT_RefSeqInText

@ eErr_SEQ_DESCR_IncorrectlyFormattedVoucherID

@ eErr_SEQ_DESCR_StrainWithEnvironSample

@ eErr_SEQ_FEAT_OrfCdsHasProduct

@ eErr_SEQ_DESCR_BadStrucCommMultipleFields

@ eErr_SEQ_FEAT_CDSmRNAMismatchTranscriptIDs

@ eErr_SEQ_FEAT_PartialProblemOrganelle3Prime

@ eErr_SEQ_ALIGN_AlignDimOne

@ eErr_SEQ_FEAT_ErroneousException

@ eErr_SEQ_FEAT_ImproperBondLocation

@ eErr_SEQ_FEAT_InvalidPseudoQualifier

@ eErr_SEQ_PKG_GraphPackagingProblem

@ eErr_SEQ_FEAT_ExtendablePartialProblem

@ eErr_SEQ_FEAT_FeatureSeqIDCaseDifference

@ eErr_SEQ_DESCR_BadNullCollectionDate

@ eErr_SEQ_FEAT_SeqFeatXrefFeatureMissing

@ eErr_SEQ_INST_OverlappingDeltaRange

@ eErr_SEQ_FEAT_BadProductSeqId

@ eErr_SEQ_FEAT_PeptideFeatureLacksCDS

@ eErr_SEQ_FEAT_InvalidCompareRefSeqAccession

@ eErr_SEQ_FEAT_OverlappingPeptideFeat

@ eErr_SEQ_DESCR_BadKeywordNoTechnique

@ eErr_SEQ_DESCR_OrganismNotFound

@ eErr_SEQ_FEAT_BadTranssplicedInterval

@ eErr_SEQ_FEAT_InvalidReplace

@ eErr_SEQ_FEAT_ExtraProteinFeature

@ eErr_SEQ_INST_SeqLocLength

@ eErr_SEQ_INST_FarLocationExcludesFeatures

@ eErr_SEQ_DESCR_InconsistentVirusMoltype

@ eErr_SEQ_ALIGN_SegsDimOne

@ eErr_SEQ_DESCR_MultipleTaxonIDs

@ eErr_SEQ_INST_IdOnMultipleBioseqs

@ eErr_SEQ_FEAT_GeneOnNucPositionOfPeptide

@ eErr_SEQ_DESCR_MoltypeOtherGenetic

@ eErr_SEQ_DESCR_BadKeyword

@ eErr_SEQ_INST_HighNpercent3Prime

@ eErr_SEQ_INST_SeqPortFail

@ eErr_SEQ_FEAT_UnknownImpFeatKey

@ eErr_SEQ_FEAT_DuplicateTranslExcept

@ eErr_SEQ_INST_BadSecondaryAccn

@ eErr_SEQ_DESCR_NoPubFound

@ eErr_SEQ_DESCR_BadInstitutionCountry

@ eErr_SEQ_DESCR_MissingPlasmidName

@ eErr_SEQ_INST_InvalidAlphabet

@ eErr_SEQ_FEAT_IdenticalMRNAtranscriptIDs

@ eErr_SEQ_ALIGN_LenMorethanBiolen

@ eErr_SEQ_FEAT_CDSonMinusStrandMRNA

@ eErr_SEQ_DESCR_UnculturedNeedsEnvSample

@ eErr_SEQ_DESCR_BadTentativeName

@ eErr_SEQ_PKG_SegSetNotParts

@ eErr_SEQ_INST_MolNuclAcid

@ eErr_SEQ_DESCR_MoltypeOther

@ eErr_SEQ_DESCR_BadPlasmidChromosomeLinkageName

@ eErr_SEQ_GRAPH_GraphSeqLitLen

@ eErr_SEQ_DESCR_Inconsistent

@ eErr_SEQ_INST_ExtNotAllowed

@ eErr_GENERIC_BadAffilState

@ eErr_SEQ_DESCR_BadTextInSourceQualifier

@ eErr_SEQ_DESCR_SuspectedContaminatedCellLine

@ eErr_SEQ_DESCR_InconsistentRefSeqMoltype

@ eErr_SEQ_PKG_ArchaicFeatureLocation

@ eErr_SEQ_GRAPH_GraphMax

@ eErr_SEQ_FEAT_PartialProblemHasStop

@ eErr_SEQ_DESCR_AmbiguousSpecificHost

@ eErr_SEQ_DESCR_StrucCommMissingPrefixOrSuffix

@ eErr_SEQ_DESCR_TaxonomyNoValidTaxids

@ eErr_SEQ_DESCR_BadGeoLocNameCapitalization

@ eErr_SEQ_FEAT_AssemblyGapCoversSequence

@ eErr_GENERIC_BarcodeTestFails

@ eErr_SEQ_FEAT_PseudoCdsViaGeneHasProduct

@ eErr_SEQ_FEAT_CodonQualifierUsed

@ eErr_SEQ_FEAT_PartialProblem5Prime

@ eErr_SEQ_FEAT_NestedSeqLocMix

@ eErr_SEQ_FEAT_ShortIntron

@ eErr_SEQ_ALIGN_BlastAligns

@ eErr_SEQ_INST_LongHtgsSequence

@ eErr_SEQ_ALIGN_SegsNumsegMismatch

@ eErr_SEQ_FEAT_SplitEcNumber

@ eErr_SEQ_FEAT_AssemblyGapAdjacentToNs

@ eErr_SEQ_FEAT_InvalidPunctuation

@ eErr_SEQ_FEAT_RareSpliceConsensusDonor

@ eErr_SEQ_FEAT_LocusTagProductMismatch

@ eErr_SEQ_FEAT_CDSmRNAMismatchLocation

@ eErr_SEQ_FEAT_UnknownFeatureQual

@ eErr_SEQ_DESCR_ChromosomeWithoutLocation

@ eErr_SEQ_ALIGN_UnexpectedAlignmentType

@ eErr_SEQ_DESCR_MultipleChromosomes

@ eErr_SEQ_FEAT_ExceptionRequiresLocusTag

@ eErr_SEQ_GRAPH_GraphLocInvalid

@ eErr_SEQ_DESCR_StructuredSourceNote

@ eErr_GENERIC_BarcodeBadCollectionDate

@ eErr_SEQ_FEAT_TranscriptMismatches

@ eErr_SEQ_FEAT_InconsistentGeneOntologyTermAndId

@ eErr_SEQ_INST_TrailingX

@ eErr_SEQ_DESCR_InvalidMatingType

@ eErr_SEQ_PKG_MisplacedMolInfo

@ eErr_GENERIC_EmbeddedScript

@ eErr_SEQ_DESCR_InconsistentDates

@ eErr_GENERIC_BarcodeTestPasses

@ eErr_SEQ_GRAPH_GraphAbove

@ eErr_SEQ_ALIGN_SegmentGap

@ eErr_SEQ_FEAT_IncorrectQualifierCapitalization

@ eErr_SEQ_FEAT_InvalidNumberQualifier

@ eErr_SEQ_GRAPH_GraphBioseqLen

@ eErr_SEQ_INST_CircularProtein

@ eErr_SEQ_DESCR_WrongBiomolForTSA

@ eErr_SEQ_INST_NoIdOnBioseq

@ eErr_SEQ_FEAT_FeatureInsideGap

@ eErr_SEQ_DESCR_AmbiguousModForward

@ eErr_SEQ_FEAT_DifferntIdTypesInSeqLoc

@ eErr_SEQ_DESCR_BadStrucCommMissingField

@ eErr_SEQ_DESCR_BadSubSource

@ eErr_SEQ_FEAT_InvalidRNAFeature

@ eErr_SEQ_FEAT_tRNArange

@ eErr_SEQ_FEAT_GeneIdMismatch

@ eErr_SEQ_ALIGN_SumLenStart

@ eErr_SEQ_INST_PartsOutOfOrder

@ eErr_GENERIC_StructuredCitGenCit

@ eErr_SEQ_FEAT_MissingMRNAproduct

@ eErr_SEQ_FEAT_tRNAmRNAmixup

@ eErr_SEQ_DESCR_DBLinkOnSet

@ eErr_SEQ_FEAT_BadFullLengthFeature

@ eErr_SEQ_ALIGN_NullSegs

@ eErr_SEQ_FEAT_LocOnSegmentedBioseq

@ eErr_SEQ_DESCR_InconsistentGenBankblocks

@ eErr_SEQ_FEAT_BadCharInAuthorName

@ eErr_SEQ_DESCR_MultipleStrains

@ eErr_SEQ_ALIGN_StrandRev

@ eErr_SEQ_FEAT_UndesiredProteinName

@ eErr_SEQ_FEAT_MissingGeneLocusTag

@ eErr_GENERIC_BarcodeMissingOrderAssignment

@ eErr_SEQ_FEAT_FarLocation

@ eErr_SEQ_INST_MolinfoOther

@ eErr_SEQ_FEAT_SgmlPresentInText

@ eErr_SEQ_DESCR_BadGeoLocNameCode

@ eErr_SEQ_INST_BadSeqIdLength

@ eErr_SEQ_FEAT_MrnaTransFail

@ eErr_SEQ_INST_SeqDataNotAllowed

@ eErr_SEQ_GRAPH_GraphStopPhase

@ eErr_SEQ_GRAPH_GraphStartPhase

@ eErr_SEQ_INST_BadHTGSeq

@ eErr_SEQ_DESCR_InvalidSexQualifier

@ eErr_SEQ_FEAT_InvalidFuzz

@ eErr_SEQ_FEAT_InvalidInferenceValue

@ eErr_SEQ_FEAT_GeneXrefNeeded

@ eErr_SEQ_FEAT_PartialProblemOrganelle5Prime

@ eErr_SEQ_FEAT_InvalidType

@ eErr_SEQ_FEAT_BadAuthorSuffix

@ eErr_SEQ_DESCR_TaxonomyAmbiguousName

@ eErr_SEQ_FEAT_SerialInComment

@ eErr_SEQ_DESCR_NoKeywordHasTechnique

@ eErr_SEQ_INST_UnexpectedIdentifierChange

@ eErr_SEQ_INST_WGSseqGapProblem

@ eErr_SEQ_DESCR_TitleNotAppropriateForSet

@ eErr_SEQ_DESCR_MultipleStrucComms

@ eErr_SEQ_FEAT_InconsistentRRNAstrands

@ eErr_SEQ_FEAT_PartialProblemNotSpliceConsensus5Prime

@ eErr_SEQ_FEAT_AltStartCodonException

@ eErr_SEQ_DESCR_LatLonState

@ eErr_SEQ_PKG_ArchaicFeatureProduct

@ eErr_GENERIC_UnexpectedPubStatusComment

@ eErr_SEQ_DESCR_MultipleSourceQualifiers

@ eErr_SEQ_FEAT_WrongQualOnCDS

@ eErr_SEQ_FEAT_BadRRNAcomponentOverlapAndOrder

@ eErr_SEQ_FEAT_LocusTagHasSpace

@ eErr_SEQ_INST_LongLiteralSequence

@ eErr_SEQ_FEAT_BadRRNAcomponentOverlap

@ eErr_SEQ_FEAT_BadTrailingCharacter

@ eErr_SEQ_GRAPH_GraphACGTScore

@ eErr_SEQ_DESCR_DBLinkBadFormat

@ eErr_SEQ_PKG_ConSetProblem

@ eErr_SEQ_FEAT_InvalidForType

@ eErr_SEQ_FEAT_IntervalBeginsOrEndsInGap

@ eErr_SEQ_FEAT_GeneLocusCollidesWithLocusTag

@ eErr_SEQ_ALIGN_NucProtMixture

@ eErr_SEQ_FEAT_ProteinNameEndsInBracket

@ eErr_SEQ_DESCR_UserObjectNoType

@ eErr_SEQ_DESCR_WrongVoucherType

@ eErr_SEQ_FEAT_CDSgeneRange

@ eErr_SEQ_INST_MitoMetazoanTooLong

@ eErr_SEQ_INST_ProteinsHaveGeneralID

@ eErr_SEQ_GRAPH_GraphOutOfOrder

@ eErr_SEQ_FEAT_BadInternalCharacter

@ eErr_SEQ_FEAT_TranslExceptIsPartial

@ eErr_SEQ_DESCR_HasStrainAndIsolate

@ eErr_GENERIC_BarcodeMissingGeoLocName

@ eErr_SEQ_DESCR_CompleteGenomeLacksBioProject

@ eErr_SEQ_DESCR_NoSourceDescriptor

@ eErr_SEQ_DESCR_CollidingPubMedID

@ eErr_SEQ_FEAT_DuplicateFeat

@ eErr_SEQ_FEAT_PseudoCdsHasProtXref

@ eErr_SEQ_DESCR_BadCollectionCode

@ eErr_SEQ_FEAT_BadProteinName

@ eErr_SEQ_INST_ExtBadOrMissing

@ eErr_SEQ_FEAT_FeatureProductInconsistency

@ eErr_SEQ_DESCR_SyntheticConstructWrongMolType

@ eErr_GENERIC_PublicationInconsistency

@ eErr_GENERIC_BadSubmissionAuthorName

@ eErr_GENERIC_CollidingSerialNumbers

@ eErr_SEQ_PKG_ComponentMissingTitle

@ eErr_SEQ_FEAT_DuplicateGeneConflictingLocusTag

@ eErr_SEQ_DESCR_DBLinkMissingUserObject

@ eErr_SEQ_INST_TSAHistAssemblyMissing

@ eErr_SEQ_FEAT_MissingLocation

@ eErr_SEQ_DESCR_TaxonomyLookupProblem

@ eErr_SEQ_DESCR_FileOpenCollision

@ eErr_SEQ_DESCR_AmbiguousName

@ eErr_SEQ_ALIGN_SegsPresentMismatch

@ eErr_SEQ_PKG_InternalGenBankSet

@ eErr_SEQ_DESCR_BadStrucCommFieldOutOfOrder

@ eErr_SEQ_DESCR_BadStrucCommInvalidPrefix

@ eErr_SEQ_DESCR_DBLinkBadBioProject

@ eErr_SEQ_FEAT_MultiIntervalGene

@ eErr_SEQ_DESCR_BioSourceMissing

@ eErr_SEQ_FEAT_ExceptionMissingText

@ eErr_SEQ_FEAT_BadAnticodonCodon

@ eErr_SEQ_FEAT_BadTrailingHyphen

@ eErr_SEQ_FEAT_OldLocusTagMismtach

@ eErr_SEQ_DESCR_MolInfoConflictsWithBioSource

@ eErr_SEQ_INST_InstantiatedGapMismatch

@ eErr_SEQ_FEAT_UTRdoesNotAbutCDS

@ eErr_SEQ_ALIGN_FastaLike

@ eErr_SEQ_INST_PartialInconsistent

@ eErr_SEQ_FEAT_PseudoRnaViaGeneHasProduct

@ eErr_SEQ_DESCR_BadNullGeoLocName

@ eErr_SEQ_DESCR_NoTaxonID

@ eErr_SEQ_FEAT_ConflictFlagSet

@ eErr_SEQ_FEAT_FeatureBeginsOrEndsWithN

@ eErr_SEQ_DESCR_LatLonFormat

@ eErr_SEQ_FEAT_StrandOther

@ eErr_SEQ_FEAT_UnnecessaryGeneXref

@ eErr_SEQ_FEAT_CollidingLocusTags

@ eErr_SEQ_PKG_FeaturePackagingProblem

@ eErr_SEQ_DESCR_MultipleNames

@ eErr_SEQ_FEAT_PartialProblemNotSpliceConsensus3Prime

@ eErr_SEQ_FEAT_DeletedEcNumber

@ eErr_SEQ_FEAT_FeatureIsMostlyNs

@ eErr_SEQ_ALIGN_SegsDimMismatch

@ eErr_SEQ_INST_BadSeqIdFormat

@ eErr_SEQ_FEAT_InvalidMatchingReplace

@ eErr_SEQ_PKG_GenomicProductPackagingProblem

@ eErr_SEQ_INST_CaseDifferenceInSeqID

@ eErr_SEQ_PKG_SegSetMixedBioseqs

@ eErr_SEQ_FEAT_NoCDSbetweenUTRs

@ eErr_SEQ_INST_ZeroGiNumber

@ eErr_INTERNAL_Exception

@ eErr_SEQ_FEAT_BadEcNumberFormat

@ eErr_SEQ_DESCR_DBLinkBadSRAaccession

@ eErr_SEQ_DESCR_MissingText

@ eErr_SEQ_FEAT_BothStrands

@ eErr_SEQ_INST_ConflictingIdsOnBioseq

@ eErr_SEQ_FEAT_UnindexedFeature

@ eErr_SEQ_FEAT_CDSonMinusStrandTranscribedRNA

@ eErr_SEQ_DESCR_WrongOrganismFor16SrRNA

@ eErr_SEQ_INST_HistAssemblyMissing

@ eErr_SEQ_FEAT_ExceptionProblem

@ eErr_SEQ_FEAT_CDSproductPackagingProblem

@ eErr_SEQ_DESCR_FakeStructuredComment

@ eErr_SEQ_FEAT_OldLocusTagBadFormat

@ eErr_SEQ_DESCR_MissingLineage

@ eErr_SEQ_FEAT_RedundantFields

@ eErr_SEQ_PKG_NoCdRegionPtr

@ eErr_SEQ_INST_InternalNsInSeqRaw

@ eErr_SEQ_DESCR_BadOrgMod

@ eErr_SEQ_DESCR_BadSpecificHost

@ eErr_SEQ_INST_TerminalNs

@ eErr_SEQ_DESCR_BadPCRPrimerName

@ eErr_SEQ_ALIGN_StartLessthanZero

@ eErr_SEQ_FEAT_ColdShockProteinProblem

@ eErr_SEQ_DESCR_OrgModValueInvalid

@ eErr_GENERIC_BarcodeMissingPrimers

@ eErr_SEQ_DESCR_BadOrganelleLocation

@ eErr_SEQ_FEAT_TrnaCodonWrong

@ eErr_SEQ_FEAT_NoNameForProtein

@ eErr_SEQ_FEAT_SeqFeatXrefProblem

@ eErr_SEQ_INST_PrimaryAndThirdPartyMixture

@ eErr_SEQ_ALIGN_StartMorethanBiolen

@ eErr_SEQ_FEAT_RptUnitRangeProblem

@ eErr_SEQ_FEAT_InvalidVariationReplace

@ eErr_SEQ_FEAT_SeqFeatXrefNotReciprocal

@ eErr_SEQ_DESCR_BadKeywordForStrucComm

@ eErr_SEQ_FEAT_SeqLocOrder

@ eErr_SEQ_DESCR_TaxonomyIsSpeciesProblem

@ eErr_SEQ_DESCR_EnvironSampleMissingQualifier

@ eErr_SEQ_FEAT_CDSdoesNotMatchVDJC

@ eErr_SEQ_FEAT_CDSmRNAXrefLocationProblem

@ eErr_SEQ_FEAT_AnticodonStrandConflict

@ eErr_SEQ_DESCR_InconsistentTaxNameSet

@ eErr_SEQ_PKG_SingleItemSet

@ eErr_GENERIC_BarcodeTooShort

@ eErr_SEQ_DESCR_MultipleIsolates

@ eErr_SEQ_DESCR_BadCountryCode

@ eErr_SEQ_ALIGN_SegsPresentStartsMismatch

@ eErr_SEQ_FEAT_InvalidRepeatUnitLength

@ eErr_SEQ_DESCR_ChromosomeLocation

@ eErr_SEQ_DESCR_InconsistentMolType

@ eErr_SEQ_FEAT_CDSmRNAMissingProteinIDs

@ eErr_SEQ_DESCR_BioSourceNeedsChromosome

@ eErr_SEQ_DESCR_WGSmasterLacksBioSample

@ eErr_SEQ_FEAT_VectorContamination

@ eErr_SEQ_FEAT_AbuttingIntervals

@ eErr_SEQ_FEAT_BadConflictFlag

@ eErr_SEQ_FEAT_EcNumberInProteinComment

@ eErr_SEQ_FEAT_MultiIntervalIntron

@ eErr_SEQ_DESCR_InconsistentTPA

@ eErr_SEQ_FEAT_LocusTagProblem

@ eErr_SEQ_DESCR_AmbiguousTypeMaterial

@ eErr_SEQ_DESCR_BioSourceInconsistency

@ eErr_SEQ_GRAPH_GraphMin

@ eErr_SEQ_FEAT_CDSmRNArange

@ eErr_SEQ_DESCR_TaxonomyEmptyInput

@ eErr_SEQ_FEAT_OnlyGeneXrefs

@ eErr_SEQ_DESCR_ModifierTypeConflict

@ eErr_SEQ_FEAT_UnnecessaryCitPubEquiv

@ eErr_SEQ_INST_HighNpercent5Prime

@ eErr_SEQ_FEAT_TranslExcept

@ eErr_SEQ_DESCR_HostIdenticalToOrganism

@ eErr_SEQ_FEAT_ExceptInconsistent

@ eErr_SEQ_DESCR_BadBioSourceFrequencyValue

@ eErr_SEQ_DESCR_ScaffoldLacksBioProject

@ eErr_SEQ_PKG_NucProtNotSegSet

@ eErr_SEQ_INST_InternalNsAdjacentToGap

@ eErr_SEQ_FEAT_PartialProblem

@ eErr_SEQ_DESCR_MultipleComments

@ eErr_SEQ_INST_SeqDataNotFound

@ eErr_SEQ_INST_InternalGapsInSeqRaw

@ eErr_SEQ_DESCR_ReplacedCountryCode

@ eErr_SEQ_FEAT_MultipleGeneOverlap

@ eErr_SEQ_FEAT_RegulatoryClassOtherNeedsNote

@ eErr_SEQ_FEAT_GeneRefHasNoData

@ eErr_SEQ_INST_DuplicateSegmentReferences

@ eErr_SEQ_FEAT_TooManyInferenceAccessions

@ eErr_SEQ_FEAT_LocusTagGeneLocusMatch

@ eErr_GENERIC_MissingVolumeEpub

@ eErr_SEQ_DESCR_InconsistentWGSFlags

@ eErr_SEQ_FEAT_TerminalXDiscrepancy

@ eErr_SEQ_DESCR_ReplacedGeoLocNameCode

@ eErr_SEQ_FEAT_CDSmRNAmismatchCount

@ eErr_SEQ_ALIGN_SegsPresentStrandsMismatch

@ eErr_SEQ_FEAT_MiscFeatureNeedsNote

@ eErr_SEQ_DESCR_UserObjectNoData

@ eErr_SEQ_FEAT_UTRdoesNotExtendToEnd

@ eErr_SEQ_DESCR_RegionMissingText

@ eErr_SEQ_INST_SeqLitGapLength0

@ eErr_SEQ_INST_SeqIdNameHasSpace

@ eErr_SEQ_DESCR_UnbalancedParentheses

@ eErr_SEQ_DESCR_RefGeneTrackingWithoutStatus

@ eErr_SEQ_DESCR_MultipleTitles

@ eErr_SEQ_FEAT_FocusOnBioSourceFeature

@ eErr_SEQ_DESCR_ProteinTechniqueOnNucleotide

@ eErr_SEQ_FEAT_PolyAsignalNotRange

@ eErr_SEQ_ALIGN_ShortAln

@ eErr_SEQ_DESCR_CommentMissingText

@ eErr_SEQ_PKG_RefSeqPopSet

@ eErr_SEQ_DESCR_BioSourceNeedsFocus

@ eErr_SEQ_DESCR_CollidingPublications

@ eErr_SEQ_FEAT_PartialProblemmRNASequence3Prime

@ eErr_SEQ_PKG_NucProtProblem

@ eErr_SEQ_FEAT_UndesiredGeneSynonym

@ eErr_SEQ_FEAT_GenomeSetMixedStrand

@ eErr_SEQ_INST_InternalNsInSeqLit

@ eErr_SEQ_FEAT_BadTrnaCodon

@ eErr_SEQ_FEAT_GenCodeInvalid

@ eErr_SEQ_INST_SeqDataLenWrong

@ eErr_GENERIC_BadLastName

@ eErr_SEQ_ALIGN_EndMorethanBiolen

@ eErr_SEQ_FEAT_PseudoCDSmRNArange

@ eErr_SEQ_ANNOT_AnnotLOCs

@ eErr_SEQ_INST_GapInProtein

@ eErr_SEQ_INST_SeqGapProblem

@ eErr_SEQ_INST_InvalidResidue

@ eErr_SEQ_FEAT_BadCharInAuthorLastName

@ eErr_SEQ_FEAT_PartialProblemmRNASequence5Prime

@ eErr_SEQ_GRAPH_GraphBelow

@ eErr_SEQ_INST_RnaDnaConflict

@ eErr_SEQ_FEAT_InvalidFeatureForMRNA

@ eErr_SEQ_FEAT_FeatureCrossesGap

@ eErr_SEQ_FEAT_SelfReferentialProduct

@ eErr_SEQ_DESCR_MissingMetagenomicQualifier

@ eErr_SEQ_FEAT_CDSwithNoMRNA

@ eErr_SEQ_FEAT_GapFeatureProblem

@ eErr_SEQ_FEAT_HypotheticalProteinMismatch

@ eErr_SEQ_DESCR_SyntheticConstructNeedsArtificial

@ eErr_SEQ_INST_TpaAssemblyProblem

@ eErr_SEQ_PKG_MissingAutodef

@ eErr_GENERIC_DeltaSeqError

@ eErr_SEQ_FEAT_MissingGeneXref

@ eErr_GENERIC_BarcodeMissingVoucher

@ eErr_SEQ_ALIGN_EndLessthanZero

@ eErr_SEQ_FEAT_RecombinationClassOtherNeedsNote

@ eErr_SEQ_DESCR_NonViralSegment

@ eErr_SEQ_FEAT_MissingExceptionFlag

@ eErr_SEQ_DESCR_UnculturedGenome

@ eErr_SEQ_FEAT_TaxonDbxrefOnFeature

@ eErr_SEQ_FEAT_IntronIsStopCodon

#define ERR_CODE_BEGIN(x)

Base class for all serializable objects.

CConstRef< CSerialObject > m_Object

CConstRef< CSeq_entry > m_Ctx

CValidErrItem & operator=(const CValidErrItem &value)=delete

CValidErrItem(const CValidErrItem &value)=delete

void SetContext(CConstRef< CSeq_entry > ctx)

const CSeq_entry & GetContext() const

CValidErrItem_Base Tparent

EDiagSev GetSeverity() const

bool IsSetContext() const

CNetStorageException::EErrCode ConvertErrCode(CNetCacheException::TErrCode code)

Include a standard set of the NCBI C++ Toolkit most basic headers.

static const char * str(char *buf, int n)

EDiagSev

Severity level for the posted diagnostics.

bool NotEmpty(void) const THROWS_NONE

Check if CConstRef is not empty – pointing to an object and has a non-null value.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_VALERR_EXPORT

TSev GetSev(void) const

Get the Sev member data.

const GenericPointer< typename T::ValueType > T2 value

Defines NCBI C++ diagnostic APIs, classes, and macros.

static wxString GetContext(const wxString &str, int pos)

static SLJIT_INLINE sljit_ins msg(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

static CS_CONTEXT * context

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