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NCBI C++ ToolKit: include/objects/seqalign/Std_seg_.hpp Source File

vector< CRef< CSeq_id > >

;

vector< CRef< CSeq_loc > >

;

vector< CRef< CScore > >

;

IsSetDim(

)

;

CanGetDim(

)

;

ResetDim(

);

SetDefaultDim(

);

GetDim(

)

;

& SetDim(

);

IsSetIds(

)

;

CanGetIds(

)

;

ResetIds(

);

& SetIds(

);

IsSetLoc(

)

;

CanGetLoc(

)

;

ResetLoc(

);

& SetLoc(

);

IsSetScores(

)

;

CanGetScores(

)

;

ResetScores(

);

& GetScores(

)

;

Reset(

);

void SetScores(objects::CSeq_align &seq_align, objects::CScope &scope, const string &matrix_name="BLOSUM62")

Base class for all serializable objects.

static char UnassignedByte(void)

uint32_t Uint4

4-byte (32-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_SEQALIGN_EXPORT

const TScores & GetScores(void) const

Get the Scores member data.

vector< CRef< CScore > > TScores

TIds & SetIds(void)

Assign a value to Ids data member.

vector< CRef< CSeq_loc > > TLoc

Tparent::CMemberIndex< E_memberIndex, 5 > TmemberIndex

const TLoc & GetLoc(void) const

Get the Loc member data.

CStd_seg_Base(const CStd_seg_Base &)

const TIds & GetIds(void) const

Get the Ids member data.

bool CanGetScores(void) const

Check if it is safe to call GetScores method.

TDim & SetDim(void)

Assign a value to Dim data member.

bool CanGetDim(void) const

Check if it is safe to call GetDim method.

vector< CRef< CScore > > m_Scores

TLoc & SetLoc(void)

Assign a value to Loc data member.

void ResetDim(void)

Reset Dim data member.

vector< CRef< CSeq_loc > > m_Loc

TScores & SetScores(void)

Assign a value to Scores data member.

bool IsSetDim(void) const

dimensionality Check if a value has been assigned to Dim data member.

bool IsSetIds(void) const

Check if a value has been assigned to Ids data member.

vector< CRef< CSeq_id > > TIds

bool IsSetScores(void) const

Check if a value has been assigned to Scores data member.

TDim GetDim(void) const

Get the Dim member data.

DECLARE_INTERNAL_TYPE_INFO()

bool CanGetIds(void) const

Check if it is safe to call GetIds method.

vector< CRef< CSeq_id > > m_Ids

bool CanGetLoc(void) const

Check if it is safe to call GetLoc method.

void SetDefaultDim(void)

Assign default value to Dim data member.

CStd_seg_Base & operator=(const CStd_seg_Base &)

bool IsSetLoc(void) const

Check if a value has been assigned to Loc data member.

const GenericPointer< typename T::ValueType > T2 value

int GetLoc(const string &acc, const string &pat, CSeq_loc &loc, CScope &scope)

static bool GetIds(const T &d, set< string > &labels, const string name="", bool detect=false, bool found=false)

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