Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/Spliced__seg___8hpp_source.html below:

NCBI C++ ToolKit: include/objects/seqalign/Spliced_seg_.hpp Source File

eProduct_type_transcript = 0,

eProduct_type_protein = 1

list< CRef< CSpliced_exon > >

;

IsSetProduct_id(

)

;

CanGetProduct_id(

)

;

ResetProduct_id(

);

IsSetGenomic_id(

)

;

CanGetGenomic_id(

)

;

ResetGenomic_id(

);

IsSetProduct_strand(

)

;

CanGetProduct_strand(

)

;

ResetProduct_strand(

);

IsSetGenomic_strand(

)

;

CanGetGenomic_strand(

)

;

ResetGenomic_strand(

);

IsSetProduct_type(

)

;

CanGetProduct_type(

)

;

ResetProduct_type(

);

IsSetExons(

)

;

CanGetExons(

)

;

ResetExons(

);

& GetExons(

)

;

& SetExons(

);

IsSetPoly_a(

)

;

CanGetPoly_a(

)

;

ResetPoly_a(

);

GetPoly_a(

)

;

IsSetProduct_length(

)

;

CanGetProduct_length(

)

;

ResetProduct_length(

);

IsSetModifiers(

)

;

CanGetModifiers(

)

;

ResetModifiers(

);

& GetModifiers(

)

;

Reset(

);

Base class for all serializable objects.

CSpliced_seg_modifier –.

unsigned int TSeqPos

Type for sequence locations and lengths.

static char UnassignedByte(void)

void ThrowUnassigned(TMemberIndex index) const

#define ENUM_METHOD_NAME(EnumName)

uint32_t Uint4

4-byte (32-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_SEQALIGN_EXPORT

CSpliced_seg_Base(const CSpliced_seg_Base &)

CRef< TGenomic_id > m_Genomic_id

TProduct_type & SetProduct_type(void)

Assign a value to Product_type data member.

TModifiers & SetModifiers(void)

Assign a value to Modifiers data member.

bool CanGetProduct_length(void) const

Check if it is safe to call GetProduct_length method.

bool IsSetProduct_type(void) const

Check if a value has been assigned to Product_type data member.

list< CRef< CSpliced_exon > > m_Exons

const TGenomic_id & GetGenomic_id(void) const

Get the Genomic_id member data.

bool CanGetGenomic_id(void) const

Check if it is safe to call GetGenomic_id method.

bool IsSetProduct_strand(void) const

should be 'plus' or 'minus' Check if a value has been assigned to Product_strand data member.

const TProduct_id & GetProduct_id(void) const

Get the Product_id member data.

bool CanGetExons(void) const

Check if it is safe to call GetExons method.

TProduct_length & SetProduct_length(void)

Assign a value to Product_length data member.

TExons & SetExons(void)

Assign a value to Exons data member.

TProduct_length GetProduct_length(void) const

Get the Product_length member data.

bool CanGetProduct_type(void) const

Check if it is safe to call GetProduct_type method.

void ResetProduct_length(void)

Reset Product_length data member.

bool IsSetPoly_a(void) const

start of poly(A) tail on the transcript For sense transcripts: aligned product positions < poly-a <= ...

DECLARE_INTERNAL_TYPE_INFO()

bool CanGetModifiers(void) const

Check if it is safe to call GetModifiers method.

CRef< TProduct_id > m_Product_id

void ResetPoly_a(void)

Reset Poly_a data member.

bool IsSetModifiers(void) const

alignment descriptors / modifiers this provides us a set for extension Check if a value has been assi...

TProduct_type GetProduct_type(void) const

Get the Product_type member data.

TGenomic_strand GetGenomic_strand(void) const

Get the Genomic_strand member data.

bool CanGetProduct_strand(void) const

Check if it is safe to call GetProduct_strand method.

TProduct_strand & SetProduct_strand(void)

Assign a value to Product_strand data member.

void ResetProduct_type(void)

Reset Product_type data member.

ENa_strand TProduct_strand

ENa_strand m_Genomic_strand

bool IsSetProduct_id(void) const

product is either protein or transcript (cDNA) Check if a value has been assigned to Product_id data ...

list< CRef< CSpliced_seg_modifier > > TModifiers

Tparent::CMemberIndex< E_memberIndex, 10 > TmemberIndex

list< CRef< CSpliced_seg_modifier > > m_Modifiers

ENa_strand TGenomic_strand

bool IsSetGenomic_strand(void) const

Check if a value has been assigned to Genomic_strand data member.

CSpliced_seg_Base & operator=(const CSpliced_seg_Base &)

void ResetProduct_strand(void)

Reset Product_strand data member.

list< CRef< CSpliced_exon > > TExons

const TExons & GetExons(void) const

Get the Exons member data.

void ResetGenomic_strand(void)

Reset Genomic_strand data member.

bool CanGetProduct_id(void) const

Check if it is safe to call GetProduct_id method.

bool IsSetExons(void) const

set of segments involved each segment corresponds to one exon exons are always in biological order Ch...

TPoly_a & SetPoly_a(void)

Assign a value to Poly_a data member.

bool IsSetProduct_length(void) const

length of the product, in bases/residues from this (or from poly-a if present), a 3' unaligned length...

TPoly_a GetPoly_a(void) const

Get the Poly_a member data.

EProduct_type m_Product_type

bool CanGetPoly_a(void) const

Check if it is safe to call GetPoly_a method.

TProduct_strand GetProduct_strand(void) const

Get the Product_strand member data.

EProduct_type TProduct_type

TGenomic_strand & SetGenomic_strand(void)

Assign a value to Genomic_strand data member.

const TModifiers & GetModifiers(void) const

Get the Modifiers member data.

bool CanGetGenomic_strand(void) const

Check if it is safe to call GetGenomic_strand method.

ENa_strand m_Product_strand

bool IsSetGenomic_id(void) const

Check if a value has been assigned to Genomic_id data member.

ENa_strand

strand of nucleic acid

const GenericPointer< typename T::ValueType > T2 value

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4