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NCBI C++ ToolKit: include/objects/seqalign/Spliced_exon_chunk_.hpp Source File

Reset(

);

ResetSelection(

);

E_Choice Which(

)

;

CheckSelected(E_Choice index)

;

NCBI_NORETURN

ThrowInvalidSelection(E_Choice index)

;

SelectionName(E_Choice index);

IsMatch(

)

;

GetMatch(

)

;

& SetMatch(

);

IsMismatch(

)

;

IsDiag(

)

;

GetDiag(

)

;

& SetDiag(

);

IsProduct_ins(

)

;

IsGenomic_ins(

)

;

*

sm_SelectionNames[];

Base class for all serializable objects.

Spliced-exon-chunk: piece of an exon lengths are given in nucleotide bases (1/3 of aminoacid when pro...

unsigned int TSeqPos

Type for sequence locations and lengths.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_SEQALIGN_EXPORT

TProduct_ins m_Product_ins

void Select(E_Choice index, EResetVariant reset=eDoResetVariant)

Select the requested variant if needed.

E_Choice

Choice variants.

virtual void ResetSelection(void)

Reset the selection (set it to e_not_set).

TMatch GetMatch(void) const

Get the variant data.

TProduct_ins & SetProduct_ins(void)

Select the variant.

void CheckSelected(E_Choice index) const

Verify selection, throw exception if it differs from the expected.

bool IsMismatch(void) const

Check if variant Mismatch is selected.

TDiag & SetDiag(void)

Select the variant.

void Select(E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)

Select the requested variant if needed, allocating CObject variants from memory pool.

TDiag GetDiag(void) const

Get the variant data.

E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

TMismatch GetMismatch(void) const

Get the variant data.

TMismatch & SetMismatch(void)

Select the variant.

TProduct_ins m_Product_ins

CSpliced_exon_chunk_Base & operator=(const CSpliced_exon_chunk_Base &)

TGenomic_ins m_Genomic_ins

bool IsGenomic_ins(void) const

Check if variant Genomic_ins is selected.

bool IsMatch(void) const

Check if variant Match is selected.

TGenomic_ins GetGenomic_ins(void) const

Get the variant data.

TGenomic_ins m_Genomic_ins

TGenomic_ins & SetGenomic_ins(void)

Select the variant.

void ThrowInvalidSelection(E_Choice index) const

Throw 'InvalidSelection' exception.

bool IsDiag(void) const

Check if variant Diag is selected.

DECLARE_INTERNAL_TYPE_INFO()

TMatch & SetMatch(void)

Select the variant.

bool IsProduct_ins(void) const

Check if variant Product_ins is selected.

CSpliced_exon_chunk_Base(const CSpliced_exon_chunk_Base &)

void DoSelect(E_Choice index, CObjectMemoryPool *pool=0)

TProduct_ins GetProduct_ins(void) const

Get the variant data.

E_Choice Which(void) const

Which variant is currently selected.

@ e_Product_ins

insertion in product sequence (i.e. gap in the genomic sequence)

@ e_Diag

both sequences are represented, there is sufficient similarity between product and genomic sequences....

@ e_Genomic_ins

insertion in genomic sequence (i.e. gap in the product sequence)

@ e_Match

both sequences represented, product and genomic sequences match

@ e_not_set

No variant selected.

@ e_Mismatch

both sequences represented, product and genomic sequences do not match

const GenericPointer< typename T::ValueType > T2 value

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