Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/Spliced__exon_8cpp_source.html below:

NCBI C++ ToolKit: src/objects/seqalign/Spliced_exon.cpp Source File

);

);

always_as_nuc)

(

!= 0 &&

!= 1) {

);

);

vector<int> direction;

(chunk.

()) {

pos[0] += chunk.

() * direction[0];

pos[1] += chunk.

() * direction[1];

pos[0] += chunk.

() * direction[0];

pos[1] += chunk.

() * direction[1];

insertions &= within_product_ranges;

User-defined methods of the data storage class.

bool IntersectingWith(const TRange &r) const

CRangeCollection< TSeqPos > GetRowSeq_insertions(CSeq_align::TDim row, const CSpliced_seg &seg) const

Return insertions within exon.

TSeqRange GetRowSeq_range(CSeq_align::TDim row, bool always_as_nuc) const

Return exon's range within this row.

CRef< CSeq_interval > CreateRowSeq_interval(CSeq_align::TDim row, const CSpliced_seg &seg) const

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

void Reset(void)

Reset reference object.

CRange< TSeqPos > TSeqRange

typedefs for sequence ranges

static TThisType GetWhole(void)

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

TTo GetTo(void) const

Get the To member data.

TFrom GetFrom(void) const

Get the From member data.

bool IsSetProduct_strand(void) const

should be 'plus' or 'minus' Check if a value has been assigned to Product_strand data member.

const TGenomic_id & GetGenomic_id(void) const

Get the Genomic_id member data.

bool IsSetParts(void) const

basic seqments always are in biologic order Check if a value has been assigned to Parts data member.

TMatch GetMatch(void) const

Get the variant data.

bool IsSetProduct_strand(void) const

should be 'plus' or 'minus' Check if a value has been assigned to Product_strand data member.

const TProduct_id & GetProduct_id(void) const

Get the Product_id member data.

TGenomic_start GetGenomic_start(void) const

Get the Genomic_start member data.

const TProduct_id & GetProduct_id(void) const

Get the Product_id member data.

TDiag GetDiag(void) const

Get the variant data.

TMismatch GetMismatch(void) const

Get the variant data.

TGenomic_strand GetGenomic_strand(void) const

Get the Genomic_strand member data.

bool IsSetGenomic_strand(void) const

genomic-strand represents the strand of translation Check if a value has been assigned to Genomic_str...

bool IsSetProduct_id(void) const

product is either protein or transcript (cDNA) Check if a value has been assigned to Product_id data ...

const TParts & GetParts(void) const

Get the Parts member data.

const TProduct_start & GetProduct_start(void) const

Get the Product_start member data.

const TProduct_end & GetProduct_end(void) const

Get the Product_end member data.

bool IsSetProduct_id(void) const

product is either protein or transcript (cDNA) Check if a value has been assigned to Product_id data ...

TGenomic_ins GetGenomic_ins(void) const

Get the variant data.

bool IsSetGenomic_strand(void) const

Check if a value has been assigned to Genomic_strand data member.

TGenomic_strand GetGenomic_strand(void) const

Get the Genomic_strand member data.

TProduct_strand GetProduct_strand(void) const

Get the Product_strand member data.

list< CRef< CSpliced_exon_chunk > > TParts

TGenomic_end GetGenomic_end(void) const

Get the Genomic_end member data.

TProduct_strand GetProduct_strand(void) const

Get the Product_strand member data.

bool IsSetGenomic_id(void) const

Check if a value has been assigned to Genomic_id data member.

TProduct_ins GetProduct_ins(void) const

Get the variant data.

const TGenomic_id & GetGenomic_id(void) const

Get the Genomic_id member data.

bool IsSetGenomic_id(void) const

Check if a value has been assigned to Genomic_id data member.

E_Choice Which(void) const

Which variant is currently selected.

@ e_Product_ins

insertion in product sequence (i.e. gap in the genomic sequence)

@ e_Diag

both sequences are represented, there is sufficient similarity between product and genomic sequences....

@ e_Genomic_ins

insertion in genomic sequence (i.e. gap in the product sequence)

@ e_Match

both sequences represented, product and genomic sequences match

@ e_Mismatch

both sequences represented, product and genomic sequences do not match

void SetTo(TTo value)

Assign a value to To data member.

void SetId(TId &value)

Assign a value to Id data member.

void SetFrom(TFrom value)

Assign a value to From data member.

void SetStrand(TStrand value)

Assign a value to Strand data member.

#define row(bind, expected)

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4