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NCBI C++ ToolKit: include/objects/seqalign/Sparse_align_.hpp Source File

vector< TSeqPos >

;

IsSetFirst_id(

)

;

CanGetFirst_id(

)

;

ResetFirst_id(

);

& GetFirst_id(

)

;

IsSetSecond_id(

)

;

CanGetSecond_id(

)

;

ResetSecond_id(

);

& GetSecond_id(

)

;

IsSetNumseg(

)

;

CanGetNumseg(

)

;

ResetNumseg(

);

GetNumseg(

)

;

IsSetFirst_starts(

)

;

CanGetFirst_starts(

)

;

ResetFirst_starts(

);

IsSetSecond_starts(

)

;

CanGetSecond_starts(

)

;

ResetSecond_starts(

);

IsSetLens(

)

;

CanGetLens(

)

;

ResetLens(

);

& GetLens(

)

;

& SetLens(

);

IsSetSecond_strands(

)

;

CanGetSecond_strands(

)

;

ResetSecond_strands(

);

IsSetSeg_scores(

)

;

CanGetSeg_scores(

)

;

ResetSeg_scores(

);

Reset(

);

Base class for all serializable objects.

static char UnassignedByte(void)

void ThrowUnassigned(TMemberIndex index) const

uint32_t Uint4

4-byte (32-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_SEQALIGN_EXPORT

bool CanGetNumseg(void) const

Check if it is safe to call GetNumseg method.

bool CanGetSeg_scores(void) const

Check if it is safe to call GetSeg_scores method.

bool CanGetSecond_starts(void) const

Check if it is safe to call GetSecond_starts method.

CSparse_align_Base(const CSparse_align_Base &)

TSeg_scores & SetSeg_scores(void)

Assign a value to Seg_scores data member.

bool IsSetFirst_starts(void) const

starts on the first sequence [numseg] Check if a value has been assigned to First_starts data member.

CRef< TSecond_id > m_Second_id

const TSeg_scores & GetSeg_scores(void) const

Get the Seg_scores member data.

bool IsSetFirst_id(void) const

Check if a value has been assigned to First_id data member.

bool CanGetSecond_strands(void) const

Check if it is safe to call GetSecond_strands method.

void ResetNumseg(void)

Reset Numseg data member.

DECLARE_INTERNAL_TYPE_INFO()

bool IsSetSecond_id(void) const

Check if a value has been assigned to Second_id data member.

bool CanGetFirst_id(void) const

Check if it is safe to call GetFirst_id method.

bool CanGetFirst_starts(void) const

Check if it is safe to call GetFirst_starts method.

bool IsSetSeg_scores(void) const

per-segment scores Check if a value has been assigned to Seg_scores data member.

const TFirst_id & GetFirst_id(void) const

Get the First_id member data.

CSparse_align_Base & operator=(const CSparse_align_Base &)

vector< int > m_Second_starts

TSecond_id & SetSecond_id(void)

Assign a value to Second_id data member.

CRef< TFirst_id > m_First_id

TSecond_starts & SetSecond_starts(void)

Assign a value to Second_starts data member.

bool IsSetSecond_starts(void) const

starts on the second sequence [numseg] Check if a value has been assigned to Second_starts data membe...

TNumseg & SetNumseg(void)

Assign a value to Numseg data member.

const TSecond_starts & GetSecond_starts(void) const

Get the Second_starts member data.

TLens & SetLens(void)

Assign a value to Lens data member.

const TLens & GetLens(void) const

Get the Lens member data.

bool IsSetSecond_strands(void) const

Check if a value has been assigned to Second_strands data member.

vector< int > TSecond_starts

const TFirst_starts & GetFirst_starts(void) const

Get the First_starts member data.

Tparent::CMemberIndex< E_memberIndex, 9 > TmemberIndex

TNumseg GetNumseg(void) const

Get the Numseg member data.

bool CanGetLens(void) const

Check if it is safe to call GetLens method.

vector< CRef< CScore > > m_Seg_scores

TFirst_starts & SetFirst_starts(void)

Assign a value to First_starts data member.

vector< int > m_First_starts

const TSecond_strands & GetSecond_strands(void) const

Get the Second_strands member data.

vector< ENa_strand > m_Second_strands

TFirst_id & SetFirst_id(void)

Assign a value to First_id data member.

const TSecond_id & GetSecond_id(void) const

Get the Second_id member data.

vector< int > TFirst_starts

bool IsSetNumseg(void) const

number of segments Check if a value has been assigned to Numseg data member.

TSecond_strands & SetSecond_strands(void)

Assign a value to Second_strands data member.

vector< CRef< CScore > > TSeg_scores

bool IsSetLens(void) const

lengths of segments [numseg] Check if a value has been assigned to Lens data member.

vector< ENa_strand > TSecond_strands

bool CanGetSecond_id(void) const

Check if it is safe to call GetSecond_id method.

void ResetFirst_id(void)

Reset First_id data member.

void ResetSecond_id(void)

Reset Second_id data member.

const GenericPointer< typename T::ValueType > T2 value

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